View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5556_low_13 (Length: 310)
Name: NF5556_low_13
Description: NF5556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5556_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 47710189 - 47709908
Alignment:
| Q |
18 |
ttttatacagaaagatatttagttttggaaacaggtgctattttatatctcttttttcttttctgttctgagaagacagaacacaactatgttagtttaa |
117 |
Q |
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| T |
47710189 |
ttttatacagaaagatatttagttttggaaacaggtgctattttatatctcttttttcttttcttttctgagaagacagaacacaactatgttagtttaa |
47710090 |
T |
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| Q |
118 |
tattgcaagttgttgaagattttgattattatcagatcaaataacattgaagaatccaattatatcgattatagttaatggatatccttctatataccta |
217 |
Q |
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| T |
47710089 |
tattgcaagttgttgaagattttgattattatcagatcaaataacattgaagaatccaattatatcgattatagttaatggatatccttctatgtaccta |
47709990 |
T |
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| Q |
218 |
ttaatacattttgagcttgtaggctgttcccttgtaatcataggaaaatgtgctgcagcgtgtttttgttacagtgatgatg |
299 |
Q |
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| T |
47709989 |
ttaatacattttgagcttgtaggctgttcccttgtaatcataggaaaatgtgctgcagcgtgtttttgttacagtgatgatg |
47709908 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 182
Target Start/End: Original strand, 16560366 - 16560394
Alignment:
| Q |
154 |
tcaaataacattgaagaatccaattatat |
182 |
Q |
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| T |
16560366 |
tcaaataacattgaagaatccaattatat |
16560394 |
T |
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