View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5556_low_14 (Length: 306)
Name: NF5556_low_14
Description: NF5556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5556_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 42081904 - 42082195
Alignment:
| Q |
1 |
tcatctaatcctttaattgaataatctattattcacaagctttctatgaccatcagatcttggttttagttttctgttatgctgagtctttaatattggc |
100 |
Q |
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| T |
42081904 |
tcatataatcctttaattgaataatctattattcacaagctttctatgaccatcagatcttggttttagttttctgttatgccgagtctttaatattggc |
42082003 |
T |
|
| Q |
101 |
atttggaggtcagaacaaggacacagagtagtactagtagtgtacaaaagattggatcagaagaccgaaggaaggtgcatagagcctgagtatgacagca |
200 |
Q |
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| T |
42082004 |
atttggaggtcagaacaaggacacagagtagtactagtagtgtacaaaagattggatcagaagcccgaaggaaggtgcatagagcctgagtatgacagca |
42082103 |
T |
|
| Q |
201 |
gaatacgataaagttatgttctccagaagatgggccaagcctgcagggcctacctttgccatagtagatggaactgtaagcatgcggttgat |
292 |
Q |
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| T |
42082104 |
gaatacgattaagttatgttctccagaagatgggccaagcctgcagggcctacctttgccatagtagatggaactgtaagcatgcggttgat |
42082195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 183 - 286
Target Start/End: Original strand, 42079481 - 42079584
Alignment:
| Q |
183 |
agcctgagtatgacagcagaatacgataaagttatgttctccagaagatgggccaagcctgcagggcctacctttgccatagtagatggaactgtaagca |
282 |
Q |
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||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||| || |
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| T |
42079481 |
agcctgaatatgacagcagaataggataaagttatattctccagaagatgggccaagcctgcatggcctacctttgcaaaagtagatggaactgtaacca |
42079580 |
T |
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| Q |
283 |
tgcg |
286 |
Q |
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|||| |
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| T |
42079581 |
tgcg |
42079584 |
T |
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