View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5556_low_16 (Length: 302)
Name: NF5556_low_16
Description: NF5556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5556_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 13 - 284
Target Start/End: Complemental strand, 53617280 - 53617009
Alignment:
| Q |
13 |
aatatacaccaaatgatgcgcttctaatattgcgtgacaaatatcttcccaacatttcccctgctgaaactcaacaccatcatccaattcaatctccggt |
112 |
Q |
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| T |
53617280 |
aatatacaccaaatgatgcgcttctaatattgcgtgacaaatatcttcccaacatttcccctgctgaaactcaacaccatcatccaattcaatctccggt |
53617181 |
T |
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| Q |
113 |
aacatcgaatccggaacgtgtgcatcttgatacagcgtcaccgatcctcctcgccgaaccggaaaatacgaatcctgaaccgcaaacctatcaggaccgg |
212 |
Q |
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| T |
53617180 |
aacatcgaatctggaacgtgtgcatcttgatacagcgtcaccgatcctcctcgccgaaccggaaaatacgaatcctgaaccgcaaacctatcaggaccgg |
53617081 |
T |
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| Q |
213 |
gaataacgccggaacgatacataggattttcatcgcatctcgtgaatttcatttcgagaaaaacagcgcaat |
284 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53617080 |
gaataacaccggaacgatacataggattttcatcgcatctcgtgaatttcatttcgagaaaaacagcgcaat |
53617009 |
T |
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