View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5556_low_17 (Length: 284)

Name: NF5556_low_17
Description: NF5556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5556_low_17
NF5556_low_17
[»] chr7 (6 HSPs)
chr7 (18-279)||(27281748-27282009)
chr7 (18-279)||(27296216-27296477)
chr7 (18-279)||(27271637-27271898)
chr7 (18-138)||(27220286-27220406)
chr7 (179-274)||(27249295-27249390)
chr7 (18-54)||(27165596-27165632)


Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 27281748 - 27282009
Alignment:
Q  18 cttggttttgggcattccattagccaatgctgtcattagatgtcctgatacggatataactttaacggcatgcctttcgtacgtagcatacccaaatcca 117  Q
    ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27281748 cttggttttgggcattccactagccaatgctgtcattacatgtcctgatacggatataactttaacggcatgcctttcgtacgtagcatacccaaatcca 27281847  T
Q  118 cctccccctcaaccatgttgcgatgcagttctcgatgtaactgcccaagccagaactcgcgaagatcgtcaagctgtttgcagttgcctcaaaggcctta 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27281848 cctccccctcaaccatgttgcgatgcagttctcgatgtaactgcccaagccagaactcgcgaagatcgtcaagctgtttgcagttgcctcaaaggcctta 27281947  T
Q  218 tgatcggcatacctggactcgatcttaccgccttggctgccctccctaaagtctgtgctgct 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  27281948 tgatcggcatacctggactcgatcttaccgccttggctgccctccctaaagtctgtggtgct 27282009  T

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Target: chr7; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 27296216 - 27296477
Alignment:
Q  18 cttggttttgggcattccattagccaatgctgtcattagatgtcctgatacggatataactttaacggcatgcctttcgtacgtagcatacccaaatcca 117  Q
    ||||||||||||||||||| |||||||||||||||||| ||||| |||| |||  |||||||||| || ||||||| ||||||||||| |||||| ||||    
T  27296216 cttggttttgggcattccactagccaatgctgtcattacatgtcgtgatgcggccataactttaatgggatgccttccgtacgtagcacacccaactcca 27296315  T
Q  118 cctccccctcaaccatgttgcgatgcagttctcgatgtaactgcccaagccagaactcgcgaagatcgtcaagctgtttgcagttgcctcaaaggcctta 217  Q
     |||||||||||   ||||||| ||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  27296316 tctccccctcaaaattgttgcgctgcagttcttgatgtaactggccaagccataactcgcgaagatcgtcaagctgtttgcagttgcctcaaaggcctta 27296415  T
Q  218 tgatcggcatacctggactcgatcttaccgccttggctgccctccctaaagtctgtgctgct 279  Q
    ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  27296416 tgaacggcatacctggactcgatcttaccgccttggcttccctccctaaagtctgtggtgct 27296477  T

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Target: chr7; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 27271637 - 27271898
Alignment:
Q  18 cttggttttgggcattccattagccaatgctgtcattagatgtcctgatacggatataactttaacggcatgcctttcgtacgtagcatacccaaatcca 117  Q
    |||||||||| |||||||| |||||||||||||||||| |||||||||| |||| |||||||||| | |||||||| ||||||||||| |||||| || |    
T  27271637 cttggttttgagcattccactagccaatgctgtcattacatgtcctgatgcggacataactttaaagtcatgccttccgtacgtagcacacccaactcaa 27271736  T
Q  118 cctccccctcaaccatgttgcgatgcagttctcgatgtaactgcccaagccagaactcgcgaagatcgtcaagctgtttgcagttgcctcaaaggcctta 217  Q
       ||||||| |  |||||||  ||| |||||||   ||||||||| |||   ||||||||||||||||||||| |||||||  |||||   ||||||||    
T  27271737 tggccccctctagaatgttgcactgcggttctcggcctaactgcccgagctgtaactcgcgaagatcgtcaagcggtttgcaaatgccttttaggcctta 27271836  T
Q  218 tgatcggcatacctggactcgatcttaccgccttggctgccctccctaaagtctgtgctgct 279  Q
    |||  ||||||||||| ||||||||||||||||| |||||| ||||||   |||||||||||    
T  27271837 tgaatggcatacctgggctcgatcttaccgcctttgctgccgtccctattctctgtgctgct 27271898  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 27220286 - 27220406
Alignment:
Q  18 cttggttttgggcattccattagccaatgctgtcattagatgtcctgatacggatataactttaacggcatgcctttcgtacgtagcatacccaaatcca 117  Q
    |||||||||||||||||||||||||||||||| |  |  ||||||||    ||    |||||||||  |||||||| || ||||| || |||||  ||||    
T  27220286 cttggttttgggcattccattagccaatgctgccccttcatgtcctgcagtggcacaaactttaacaccatgccttccgcacgtatcaaacccaggtcca 27220385  T
Q  118 cctccccctcaaccatgttgc 138  Q
     ||||||||||||||||||||    
T  27220386 tctccccctcaaccatgttgc 27220406  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 274
Target Start/End: Original strand, 27249295 - 27249390
Alignment:
Q  179 aagatcgtcaagctgtttgcagttgcctcaaaggccttatgatcggcatacctggactcgatcttaccgccttggctgccctccctaaagtctgtg 274  Q
    ||||||||| || ||||||| |||||||||||  | | |||  |||||||||||||||| ||||| | ||| | ||| |||||||||||| |||||    
T  27249295 aagatcgtcgagatgtttgcggttgcctcaaatccatgatgggcggcatacctggactcaatcttcctgccattgcttccctccctaaagactgtg 27249390  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 27165596 - 27165632
Alignment:
Q  18 cttggttttgggcattccattagccaatgctgtcatt 54  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  27165596 cttggttttggccattccattagccaatgctgccatt 27165632  T

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