View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5556_low_18 (Length: 256)
Name: NF5556_low_18
Description: NF5556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5556_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 37293468 - 37293231
Alignment:
| Q |
1 |
caatgttggtccccacagcaacttttaacccttcaaattcattcttgaatgatccttgaaatgcatacttaaggaaagatatatggtataaagggtattt |
100 |
Q |
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| T |
37293468 |
caatgttggtccccacatcaacttttaacccttcaaattcattcttgaatgatccttgaaatgcatacttaaggaaagatatatggtataaagggtattt |
37293369 |
T |
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| Q |
101 |
ccatagtaatttaggaagttcatttggtaatctatagaatcctgctgttaaaatcatgagtccttcaattccaccagtaatgaacattcctattacataa |
200 |
Q |
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| T |
37293368 |
ccatagtaatttaggaagttcatttggtaatctatagaatcctgctgttaaaatcatgagtccttcaattccaccagtaatgaacattcctattacataa |
37293269 |
T |
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| Q |
201 |
tttggagagatgcttccaactaccaacattaggctttc |
238 |
Q |
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| T |
37293268 |
tttggagagatgcttccaactaccaacattaggctttc |
37293231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 183
Target Start/End: Complemental strand, 37301003 - 37300845
Alignment:
| Q |
25 |
ttaacccttcaaattcattcttgaatgatccttgaaatgcatacttaaggaaagatatatggtataaagggtatttccatagtaatttaggaagttcatt |
124 |
Q |
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|||| |||||||||||||||||||| ||||||||||| ||||| | ||||| || || | ||| ||||||| ||||||| | || ||||| ||| | |
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| T |
37301003 |
ttaagccttcaaattcattcttgaaggatccttgaaaagcataagtgaggaaggaaatgtagtagcaagggtacttccataatggctttggaagatcact |
37300904 |
T |
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| Q |
125 |
tggtaatctatagaatcctgctgttaaaatcatgagtccttcaattccaccagtaatga |
183 |
Q |
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| T |
37300903 |
aggaattcgatagaatccacctgttaaaatcgcaagtccttcaactccaccagcaatga |
37300845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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