View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5556_low_19 (Length: 256)
Name: NF5556_low_19
Description: NF5556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5556_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 6543170 - 6542932
Alignment:
| Q |
1 |
cttcaaaaacagatcctcagaaactttgaaaggtgcggccaatttagcatccttaatcaaacctttggattcaagaaatttcaagacaaaagctctagga |
100 |
Q |
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| T |
6543170 |
cttcaaaaacacatcctcagaaactttgaaagctgcagccaatttagcatccttaatcaaacctttggattcaagaaatttcaagacaaaagctctagga |
6543071 |
T |
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| Q |
101 |
ataacccttttctcaagactcaacaaaagaagtattgggtgttttgcaagcacaatagggttccaacccatgtgatcaacnnnnnnnttcattgttgcct |
200 |
Q |
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| T |
6543070 |
ataacccttttctcaagactcaacaaaagaagtattgggtgttttgcaagcacaatagggttccaacccatgtgatcaacaaaaaaattcattgttgcct |
6542971 |
T |
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| Q |
201 |
caattttattaacagatgccaacatacaccatggatact |
239 |
Q |
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| T |
6542970 |
caattttattaacagatgccaacatacaccatggatact |
6542932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 6534421 - 6534183
Alignment:
| Q |
1 |
cttcaaaaacagatcctcagaaactttgaaaggtgcggccaatttagcatccttaatcaaacctttggattcaagaaatttcaagacaaaagctctagga |
100 |
Q |
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||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||| |||||||| |||||| |
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| T |
6534421 |
cttcaaaaacagatcctcagagactttgaaaggtgcagccaacttagcatccttaatcaaacctttggattgaagaaatttcaaaacaaaagccctagga |
6534322 |
T |
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| Q |
101 |
ataacccttttctcaagactcaacaaaagaagtattgggtgttttgcaagcacaatagggttccaacccatgtgatcaacnnnnnnnttcattgttgcct |
200 |
Q |
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| T |
6534321 |
ataacccttttctctaaactcatcataagaagcatcggatgtttggcaagtacattagattcccaacccatgtgattaacaagaaactgcatcaccgcct |
6534222 |
T |
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| Q |
201 |
caattttattaacagatgccaacatacaccatggatact |
239 |
Q |
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| T |
6534221 |
caattttttcctcagatgccaacatacaccatggatact |
6534183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 38 - 131
Target Start/End: Complemental strand, 6540741 - 6540648
Alignment:
| Q |
38 |
gccaatttagcatccttaatcaaacctttggattcaagaaatttcaagacaaaagctctaggaataacccttttctcaagactcaacaaaagaa |
131 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||| | | || ||| |||||||||||||||||||||||| |||||||| |
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| T |
6540741 |
gccaatttagcatccttaatcaaacctttggacacaagaaatttcaagaaagatgccctaagaataacccttttctcaagactcagcaaaagaa |
6540648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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