View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5556_low_3 (Length: 456)
Name: NF5556_low_3
Description: NF5556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5556_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Original strand, 8156552 - 8156991
Alignment:
| Q |
1 |
cggaagcgtttttgaagaattatgggcgtgggagaaaaaactcttaactttacatgatacggcagtacatgtgttttctatccagtttcaattgtgtttc |
100 |
Q |
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| T |
8156552 |
cggaagcgtttttgaagaattatgggcgtgggagaaaaaactcttaactttacatgatacggcagtacacgtgttttctatccagtttcaattgtgtttc |
8156651 |
T |
|
| Q |
101 |
ttagacctggcatattttgtagttaaaaattcactttgcttataagaatttcattactaaaatttcagcaataatatacttcaagtacaatgacagaaga |
200 |
Q |
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| T |
8156652 |
ttagacctggcatattttgtagttaaaaattcactttgcttataagaatttcattactaaaatttcagcaataatatacttcaagtacaatgacagaaca |
8156751 |
T |
|
| Q |
201 |
ttgttgcctagttagagttttcactaacagttgtattcaacatcttactatcttagtcctagctatgtatacaagagttgtactacaactacactactaa |
300 |
Q |
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| T |
8156752 |
ttgttgcctagttagagttttcactaacagttgtattcaacatcttactatcttagtcctagctatgtatacaagagttgtactacaactacactactaa |
8156851 |
T |
|
| Q |
301 |
ttgggataataacgagagaggtactggaacatgaacttgtgtcacagcatgggtcaagagcactgcaaaattcacatggagaacatactcaccacaaaag |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8156852 |
ttgggataataacgagagaggtactggaacatgaacttctgtcacagcatgggtcaagagcactgcaaaattcacatggagaacatactcaccacaaaag |
8156951 |
T |
|
| Q |
401 |
ttgcattggaatcaaacaaataaagtaatgtatacacaca |
440 |
Q |
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| T |
8156952 |
ttgcattggaatcaaacaaataaagtaatgtatacacaca |
8156991 |
T |
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