View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5556_low_4 (Length: 441)
Name: NF5556_low_4
Description: NF5556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5556_low_4 |
 | |
|
| [»] scaffold0140 (1 HSPs) |
| | |
|
| [»] scaffold0129 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0140 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 18 - 437
Target Start/End: Complemental strand, 36575 - 36156
Alignment:
| Q |
18 |
catattactttaacagtgaatcacaaagtaatgaacaagcagacaacaatagcatgacaaacaaacttcatttcatttattcaagaaacacaacttcttt |
117 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
36575 |
catattactttaacagtgaatcacaaactaatgaacaagcatacaacaatagcatgacaaacaaacttcatttcattgattcaagaaacacaacttcttt |
36476 |
T |
|
| Q |
118 |
tcattacaatcaacaatgtcataaacttcataacattgatttaacatttgaactgagtcattacactacatcttcatatatgaaatgaacattgcccaag |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36475 |
tcattacaatcaacaatgtcataaacttcataacattgatttaacatttgaaccgagtcattacactacatcttcatatatgaaatgaacattgcccaaa |
36376 |
T |
|
| Q |
218 |
atacaaccaacagaaccataaacaaatttgcctgctttcttgaatattggagcttcttctttaacttctcatttttgttgattccaaattccttcattat |
317 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
36375 |
atacaaccaacataaccataaacaaatttgccttctttcttgagtattggagcttcttctttaacttctcatttttgttgattccgaattccttcattat |
36276 |
T |
|
| Q |
318 |
tctagtaatgtctttcaacatctcttcacaattgcaatcacatggaagctttgtgacattcgaaggtgatgcttcaactcttcttactactcctggacga |
417 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||| | |
|
|
| T |
36275 |
tccagtaatgtctttcaacatctcttcacaattgcaatcacatggaagttttgtgacattcgaaggtgatgcttaagctcttcttactactcctggacaa |
36176 |
T |
|
| Q |
418 |
acatatggatgatgtccatc |
437 |
Q |
| |
|
||||||||| |||||||||| |
|
|
| T |
36175 |
acatatggaggatgtccatc |
36156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 167; Significance: 3e-89; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 144 - 437
Target Start/End: Complemental strand, 23573754 - 23573463
Alignment:
| Q |
144 |
ttcataacattgatttaacatttgaactgagtcattacactacatcttcatatatgaaatgaacattgcccaagatacaaccaacagaaccataaacaaa |
243 |
Q |
| |
|
||||||||||||||||||||||||||| ||| || |||||||||| ||| ||||| ||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
23573754 |
ttcataacattgatttaacatttgaaccgag--atcacactacatcgtcagatatgtaatgaacattgcccaagatacaaccaatgtaaacataaacaaa |
23573657 |
T |
|
| Q |
244 |
tttgcctgctttcttgaatattggagcttcttctttaacttctcatttttgttgattccaaattccttcattattctagtaatgtctttcaacatctctt |
343 |
Q |
| |
|
||||||| ||||||||| |||||||| |||||||||||||| ||||||||||||||||| ||||| || ||||||| |||||||||||||| || ||||| |
|
|
| T |
23573656 |
tttgccttctttcttgagtattggagtttcttctttaacttgtcatttttgttgattccgaattcgttgattattccagtaatgtctttcagcagctctt |
23573557 |
T |
|
| Q |
344 |
cacaattgcaatcacatggaagctttgtgacattcgaaggtgatgcttcaactcttcttactactcctggacgaacatatggatgatgtccatc |
437 |
Q |
| |
|
||||||||||||||||| |||| ||||| |||| ||| | |||||||||| ||||||||||| |||||||||||||||||| | |||||||||| |
|
|
| T |
23573556 |
cacaattgcaatcacatcgaagttttgttacatccgatgatgatgcttcagctcttcttactcctcctggacgaacatatgcaggatgtccatc |
23573463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 213 - 368
Target Start/End: Original strand, 31814943 - 31815098
Alignment:
| Q |
213 |
ccaagatacaaccaacagaaccataaacaaatttgcctgctttcttgaatattggagcttcttctttaacttctcatttttgttgattccaaattccttc |
312 |
Q |
| |
|
|||||| |||| ||||| |||||||||||| || | || ||| ||||||| ||| ||||||||||| |||||||| ||||| || |||| | || ||| |
|
|
| T |
31814943 |
ccaagaaacaatcaacaaaaccataaacaagttcgtcttcttccttgaatgttgtagcttcttcttcaacttctcgtttttcttcgttcccagatctttc |
31815042 |
T |
|
| Q |
313 |
attattctagtaatgtctttcaacatctcttcacaattgcaatcacatggaagctt |
368 |
Q |
| |
|
| || ||| | ||||||| || | |||||||||||||||||||||||||||| |
|
|
| T |
31815043 |
aacatcacagtcaactctttcatcaccacttcacaattgcaatcacatggaagctt |
31815098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 225 - 437
Target Start/End: Original strand, 13507638 - 13507850
Alignment:
| Q |
225 |
caacagaaccataaacaaatttgcctgctttcttgaatattggagcttcttctttaacttctcatttttgttgattccaaattccttcattattctagta |
324 |
Q |
| |
|
||||| || ||||||||||||||||| ||| ||||| ||||||||||||||||||| |||||| |||||||| |||| || ||||||||||||| |||| |
|
|
| T |
13507638 |
caacaaaatcataaacaaatttgccttcttccttgagtattggagcttcttctttagcttctcgtttttgtttattctgaaatccttcattattccagta |
13507737 |
T |
|
| Q |
325 |
atgtctttcaacatctcttcacaattgcaatcacatggaagctttgtgacattcgaaggtgatgcttcaactcttcttactactcctggacgaacatatg |
424 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
13507738 |
atgtttttcggcatctcttcacaattgcaatcacatggaagctttgtgacagtcaaaggtgatgcttcaactcttcttaccgctactggacgaacatata |
13507837 |
T |
|
| Q |
425 |
gatgatgtccatc |
437 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
13507838 |
gaggatgtccatc |
13507850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 225 - 437
Target Start/End: Complemental strand, 13507611 - 13507399
Alignment:
| Q |
225 |
caacagaaccataaacaaatttgcctgctttcttgaatattggagcttcttctttaacttctcatttttgttgattccaaattccttcattattctagta |
324 |
Q |
| |
|
||||| |||||||||||||||||| | ||| ||||| |||| ||||||||||||||||||||| |||||||||||| || |||||||||||| |||| |
|
|
| T |
13507611 |
caacaaaaccataaacaaatttgcattcttccttgagtattagagcttcttctttaacttctcgtttttgttgattttgaaatccttcattatttgagta |
13507512 |
T |
|
| Q |
325 |
atgtctttcaacatctcttcacaattgcaatcacatggaagctttgtgacattcgaaggtgatgcttcaactcttcttactactcctggacgaacatatg |
424 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| || ||||||| || || |||||||||| | |
|
|
| T |
13507511 |
atgtctttcagcatctcttcacaattgcaatcacgtggaagctttgtgaccgtcgaaggtgatgcttcagctattcttaccgctactagacgaacatacg |
13507412 |
T |
|
| Q |
425 |
gatgatgtccatc |
437 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
13507411 |
gaggatgtccatc |
13507399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 212 - 368
Target Start/End: Original strand, 7799387 - 7799543
Alignment:
| Q |
212 |
cccaagatacaaccaacagaaccataaacaaatttgcctgctttcttgaatattggagcttcttctttaacttctcatttttgttgattccaaattcctt |
311 |
Q |
| |
|
||||||| |||| ||||| |||||||||||| || | || ||| ||||||| ||| ||||||||||| |||||||||||||| |||||||| || || || |
|
|
| T |
7799387 |
cccaagaaacaatcaacaaaaccataaacaagttcgtcttcttccttgaatgttgtagcttcttcttcaacttctcatttttcttgattcccaaatcttt |
7799486 |
T |
|
| Q |
312 |
cattattctagtaatgtctttcaacatctcttcacaattgcaatcacatggaagctt |
368 |
Q |
| |
|
|| ||| ||| | ||||||| || | |||||||||||||||||||||||||||| |
|
|
| T |
7799487 |
caatatcacagtcaaatctttcatcaccacttcacaattgcaatcacatggaagctt |
7799543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 212 - 368
Target Start/End: Original strand, 19398488 - 19398644
Alignment:
| Q |
212 |
cccaagatacaaccaacagaaccataaacaaatttgcctgctttcttgaatattggagcttcttctttaacttctcatttttgttgattccaaattcctt |
311 |
Q |
| |
|
||||||| |||| ||||| |||||||||||| || | || ||| ||||||| ||| ||||||||||| || ||||||||||| |||||||| || || || |
|
|
| T |
19398488 |
cccaagaaacaatcaacaaaaccataaacaagttcgtcttcttccttgaatgttgtagcttcttcttcaaattctcatttttcttgattcccaaatcttt |
19398587 |
T |
|
| Q |
312 |
cattattctagtaatgtctttcaacatctcttcacaattgcaatcacatggaagctt |
368 |
Q |
| |
|
|| ||| ||| | ||||||| || | |||||||||||||||||||||||||||| |
|
|
| T |
19398588 |
caatatcacagttaaatctttcatcaccacttcacaattgcaatcacatggaagctt |
19398644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 212 - 368
Target Start/End: Original strand, 3429 - 3585
Alignment:
| Q |
212 |
cccaagatacaaccaacagaaccataaacaaatttgcctgctttcttgaatattggagcttcttctttaacttctcatttttgttgattccaaattcctt |
311 |
Q |
| |
|
||||||| |||| ||||| |||||||||||| || | || ||| ||||||| ||| ||||||||||| |||||||| ||||| || ||||| | || || |
|
|
| T |
3429 |
cccaagaaacaatcaacaaaaccataaacaagttcgtcttcttccttgaatgttgtagcttcttcttcaacttctcgtttttcttcattcccagatcttt |
3528 |
T |
|
| Q |
312 |
cattattctagtaatgtctttcaacatctcttcacaattgcaatcacatggaagctt |
368 |
Q |
| |
|
|| || ||| | ||||||| || | |||||||||||||||||||||||||||| |
|
|
| T |
3529 |
caacatcacagtcaactctttcatcaccacttcacaattgcaatcacatggaagctt |
3585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 213 - 368
Target Start/End: Original strand, 22059336 - 22059491
Alignment:
| Q |
213 |
ccaagatacaaccaacagaaccataaacaaatttgcctgctttcttgaatattggagcttcttctttaacttctcatttttgttgattccaaattccttc |
312 |
Q |
| |
|
|||||| |||| ||||| |||||||||||| || | || ||| ||||||| ||| ||||||||||| |||||||| ||||| || ||||| | || ||| |
|
|
| T |
22059336 |
ccaagaaacaatcaacaaaaccataaacaagttcgtcttcttccttgaatgttgtagcttcttcttcaacttctcgtttttcttcattcccagatctttc |
22059435 |
T |
|
| Q |
313 |
attattctagtaatgtctttcaacatctcttcacaattgcaatcacatggaagctt |
368 |
Q |
| |
|
| || ||| | ||||||| || | |||||||||||||||||||||||||||| |
|
|
| T |
22059436 |
aacatcacagtcaactctttcatcaccacttcacaattgcaatcacatggaagctt |
22059491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 339 - 374
Target Start/End: Complemental strand, 51253252 - 51253217
Alignment:
| Q |
339 |
ctcttcacaattgcaatcacatggaagctttgtgac |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
51253252 |
ctcttcacaattgcaatcacatggaagctttgtgac |
51253217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University