View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5556_low_5 (Length: 435)
Name: NF5556_low_5
Description: NF5556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5556_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 1e-85; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 250 - 419
Target Start/End: Original strand, 2250560 - 2250731
Alignment:
| Q |
250 |
gtgaagtgcttcaagaccggtatatata--ctcttgtcttgtctaacactatatgtcacatgaaatttagacaccgttcaaaaacttgcggatcctttta |
347 |
Q |
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| T |
2250560 |
gtgaagtgcttcaagaccggtatatatatgctcttgtcttgtctaacactatatgtcacatgaaatttagacaccgttcaaaaacttgcggatcctttta |
2250659 |
T |
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| Q |
348 |
acaaacgttgacccattttccttagtcttagcttcagcttgctcttgacggcgttggttataacgttcataa |
419 |
Q |
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| T |
2250660 |
acaaacgttgacccattttccttagtcttagcttcagcttgctcttgacggcgttggttataacgttcataa |
2250731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 9 - 177
Target Start/End: Original strand, 2250158 - 2250326
Alignment:
| Q |
9 |
agcaaagggaaaacaagataatacaatgtacgttaatgtccggagagagtagacacccataaatatttatccaaccctaaaatctgcaaggttattaatc |
108 |
Q |
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| T |
2250158 |
agcaaagggaaaacaagataatacaatgtacattaatgtccgcagagagtagacacccataaatatttatccaaccctaaaatctgcaaggttattaatc |
2250257 |
T |
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| Q |
109 |
atatacatgcattcatgtttaatttatacatcaaatgcattatttattatacacagatctattatctat |
177 |
Q |
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| T |
2250258 |
atatacatgcattcatgtttaaattatacatcaaatgcattatttattatacacagatctattatctat |
2250326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 2250479 - 2250526
Alignment:
| Q |
169 |
attatctatactataccacgtattgcatgtaacatactacgtgattat |
216 |
Q |
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| T |
2250479 |
attatctatactataccacgtattgcatgtaacatactacgtgattat |
2250526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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