View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5556_low_9 (Length: 357)

Name: NF5556_low_9
Description: NF5556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5556_low_9
NF5556_low_9
[»] chr8 (2 HSPs)
chr8 (15-234)||(295359-295578)
chr8 (201-234)||(26871046-26871079)
[»] scaffold0155 (1 HSPs)
scaffold0155 (196-234)||(3298-3336)
[»] chr7 (1 HSPs)
chr7 (200-234)||(21752657-21752691)
[»] chr6 (1 HSPs)
chr6 (200-234)||(16337108-16337142)
[»] chr4 (3 HSPs)
chr4 (200-234)||(17363229-17363263)
chr4 (200-234)||(51296227-51296261)
chr4 (201-234)||(29384235-29384268)
[»] chr3 (3 HSPs)
chr3 (191-229)||(22153854-22153892)
chr3 (200-229)||(52727491-52727520)
chr3 (198-234)||(43900795-43900831)
[»] chr2 (3 HSPs)
chr2 (200-234)||(42665850-42665884)
chr2 (192-229)||(41353540-41353577)
chr2 (200-228)||(42251964-42251992)
[»] chr5 (1 HSPs)
chr5 (200-229)||(27340868-27340897)
[»] chr1 (2 HSPs)
chr1 (198-227)||(586896-586925)
chr1 (201-234)||(37690429-37690462)


Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 15 - 234
Target Start/End: Original strand, 295359 - 295578
Alignment:
Q  15 acatcatcataggcacctctcttgccacgtcttcctgttttattttatctctctttgcttggtccaaaattaaggcatcaaccttagccagatatataca 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  295359 acatcatcataggcacctctcttgccacgtcttcctgttttattttatctctctttgcttggtccaaaattaaggcatcaaccttagccagatataaaca 295458  T
Q  115 tacatacttgcatcgtacatatttttccctccttatacttggatgaataaatattaggctaaattaaatcagggtcttttgaaagagagaaatgatattt 214  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  295459 tacatacttgcatcgtacatattttcccctccttatacttggatgaataaatattaggctaaattaaatcagggtcttttaaaagtgagaaatgatattt 295558  T
Q  215 gtacaatcactttatcacaa 234  Q
    |||||| |||||||||||||    
T  295559 gtacaaccactttatcacaa 295578  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 234
Target Start/End: Original strand, 26871046 - 26871079
Alignment:
Q  201 gagaaatgatatttgtacaatcactttatcacaa 234  Q
    ||||||||||||||||||||||||||||| ||||    
T  26871046 gagaaatgatatttgtacaatcactttatgacaa 26871079  T

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Target: scaffold0155 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 234
Target Start/End: Complemental strand, 3336 - 3298
Alignment:
Q  196 aaagagagaaatgatatttgtacaatcactttatcacaa 234  Q
    ||||||||||||||||||||||||| |||||| ||||||    
T  3336 aaagagagaaatgatatttgtacaaccactttctcacaa 3298  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 234
Target Start/End: Original strand, 21752657 - 21752691
Alignment:
Q  200 agagaaatgatatttgtacaatcactttatcacaa 234  Q
    |||||||||||||||||||||||||||| ||||||    
T  21752657 agagaaatgatatttgtacaatcactttctcacaa 21752691  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 234
Target Start/End: Complemental strand, 16337142 - 16337108
Alignment:
Q  200 agagaaatgatatttgtacaatcactttatcacaa 234  Q
    |||||||||||||||||||||||||||||| ||||    
T  16337142 agagaaatgatatttgtacaatcactttatgacaa 16337108  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 234
Target Start/End: Original strand, 17363229 - 17363263
Alignment:
Q  200 agagaaatgatatttgtacaatcactttatcacaa 234  Q
    |||||||||||||||||||||||||||||| ||||    
T  17363229 agagaaatgatatttgtacaatcactttattacaa 17363263  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 234
Target Start/End: Complemental strand, 51296261 - 51296227
Alignment:
Q  200 agagaaatgatatttgtacaatcactttatcacaa 234  Q
    |||||||||||||||||||||||||||||| ||||    
T  51296261 agagaaatgatatttgtacaatcactttatgacaa 51296227  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 234
Target Start/End: Complemental strand, 29384268 - 29384235
Alignment:
Q  201 gagaaatgatatttgtacaatcactttatcacaa 234  Q
    ||||||||||||||||||||||||||||| ||||    
T  29384268 gagaaatgatatttgtacaatcactttatgacaa 29384235  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 229
Target Start/End: Original strand, 22153854 - 22153892
Alignment:
Q  191 ttttgaaagagagaaatgatatttgtacaatcactttat 229  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  22153854 ttttgaaattgagaaatgatatttgtacaatcactttat 22153892  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 229
Target Start/End: Complemental strand, 52727520 - 52727491
Alignment:
Q  200 agagaaatgatatttgtacaatcactttat 229  Q
    ||||||||||||||||||||||||||||||    
T  52727520 agagaaatgatatttgtacaatcactttat 52727491  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 43900831 - 43900795
Alignment:
Q  198 agagagaaatgatatttgtacaatcactttatcacaa 234  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  43900831 agagagaaatgatatttgtacaaccactttattacaa 43900795  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 234
Target Start/End: Complemental strand, 42665884 - 42665850
Alignment:
Q  200 agagaaatgatatttgtacaatcactttatcacaa 234  Q
    |||||||||||||||||||||||||||||| ||||    
T  42665884 agagaaatgatatttgtacaatcactttattacaa 42665850  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 229
Target Start/End: Complemental strand, 41353577 - 41353540
Alignment:
Q  192 tttgaaagagagaaatgatatttgtacaatcactttat 229  Q
    ||||||| |||||||||||||||||||||||| |||||    
T  41353577 tttgaaaaagagaaatgatatttgtacaatcaatttat 41353540  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 228
Target Start/End: Complemental strand, 42251992 - 42251964
Alignment:
Q  200 agagaaatgatatttgtacaatcacttta 228  Q
    |||||||||||||||||||||||||||||    
T  42251992 agagaaatgatatttgtacaatcacttta 42251964  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 229
Target Start/End: Original strand, 27340868 - 27340897
Alignment:
Q  200 agagaaatgatatttgtacaatcactttat 229  Q
    ||||||||||||||||||||||||||||||    
T  27340868 agagaaatgatatttgtacaatcactttat 27340897  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 227
Target Start/End: Original strand, 586896 - 586925
Alignment:
Q  198 agagagaaatgatatttgtacaatcacttt 227  Q
    ||||||||||||||||||||||||||||||    
T  586896 agagagaaatgatatttgtacaatcacttt 586925  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 234
Target Start/End: Original strand, 37690429 - 37690462
Alignment:
Q  201 gagaaatgatatttgtacaatcactttatcacaa 234  Q
    ||||||||||||||||||||||||||||| ||||    
T  37690429 gagaaatgatatttgtacaatcactttatgacaa 37690462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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