View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5557-Insertion-3 (Length: 1050)
Name: NF5557-Insertion-3
Description: NF5557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5557-Insertion-3 |
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Alignment Details
Target: chr5 (Bit Score: 721; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 721; E-Value: 0
Query Start/End: Original strand, 202 - 1012
Target Start/End: Original strand, 662855 - 663665
Alignment:
| Q |
202 |
ctggaacataagagagaagttcttgctccatgaaactattactccaattctaattgatttgcatgtttgaaaatgtcttctacaccaaagaaagagatag |
301 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
662855 |
ctggaacataagagagaacttcttgctccatgaaactattactcc--ttctaattgatttgcatgtttgaaaatgtcttctacaccaaagaaagagatag |
662952 |
T |
|
| Q |
302 |
tttcactagttcctgatttcattcatgtttacaatgatggaaccatagaacgtctcaatgacatgcctaaggttccaccttcaccacaagaccttgaaac |
401 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
662953 |
tttcactagttcctgatttcattcatgtgtacaatgatggaaccatagaacgtctcaatgacatgcctaaggttacaccttcaccacaagaccttgaaac |
663052 |
T |
|
| Q |
402 |
aaatgtctcatcaaaagacattctcttttccaatgaaccttcactctttgctagactttacctaccaaaactaaccgatcaaaaccaaaaaatacctatc |
501 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
663053 |
aaatgtctcatcaaaagacattctcttttccaatgaaccttcactctttgctagactttacctaccaaaactaaccgatcaaaaccaaaaaatacctatc |
663152 |
T |
|
| Q |
502 |
ttagtctactttcatggtggtgcattttgttgtgaatcaacttttgcatcacatcatcacaaatattgtaacattattgcttctcaaggaaatgttctaa |
601 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
663153 |
ttagtctactttcatggtggtgcattttgttgtgaatcaacttttgcatcacatcatcacaaatattgtaacattattgcttctcaaggaaatgttctaa |
663252 |
T |
|
| Q |
602 |
ttttttctattgaatatagaaaagctccagaacattttcttccaatgcaatataatgattgttgggatggtctcaattgggttgcttctcataacactac |
701 |
Q |
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| T |
663253 |
ttttttctattgaatatagaaaagctccagaacattttcttccaacgcaatataatgattgttgggatggtctcaattgggttgcttctcataacactac |
663352 |
T |
|
| Q |
702 |
cgttgaaaatgttccagaaaatagtgacccttggatcattaatcatggtgatttcaacaaagtttttattggtggtgatagcagtggtgcaaatattgtt |
801 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
663353 |
cattgaaaatgttccagaaaatagtgacccttggatcattaatcatggtgatttcaacaaagtttttattggtggtgatagcagtggtgcaaatattgtt |
663452 |
T |
|
| Q |
802 |
cacaacattgctatgcgtgctggtgttacaagaatacctaatggtgttaaaatatttggtgcttatatgaaccatacannnnnnnggggttcaaaaccat |
901 |
Q |
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| T |
663453 |
cacaacattgctatgcgtgctggtgttacaagaatacctaatggtgttaaaatatttggtgcttatatgaaccatacatttttttggggttcaaaaccat |
663552 |
T |
|
| Q |
902 |
tagggtttgaaaaagttgagaaatttgagaaggtaaatgaatttgctactttgctttggaatttgttgtaccctagtgctcctttt-gcatagatgat-c |
999 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||| | ||||||||| | |
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| T |
663553 |
tagggtttgaaaaggttgagaaatttgagaaggtaaatgaatttgctactttgctttggaaatttgtgtaccctcgtgctccttttgggatagatgatcc |
663652 |
T |
|
| Q |
1000 |
aaatgtgaatcca |
1012 |
Q |
| |
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||||||||||||| |
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| T |
663653 |
aaatgtgaatcca |
663665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 83 - 173
Target Start/End: Original strand, 662741 - 662830
Alignment:
| Q |
83 |
tattgaattgtgtccatagataagattaaacaatcaaatatttttaattaaaatatcatgcataatcaatttcctaaataacgtacgtgtg |
173 |
Q |
| |
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| T |
662741 |
tattgaattgtgtccataaataagattaaacaatcaaatatttt-aattaaaatatcatgcataatcaatttcctaaataacgtacgtgtg |
662830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 405 - 827
Target Start/End: Original strand, 672827 - 673249
Alignment:
| Q |
405 |
tgtctcatcaaaagacattctcttttccaatgaaccttcactctttgctagactttacctaccaaaactaacc---------gatcaaaaccaaaaaata |
495 |
Q |
| |
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||||||||| ||||||||| ||||||||||||| |||| ||| ||||||||||||||| ||||||||||| ||||||||||||||| | |
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| T |
672827 |
tgtctcatccaaagacattgtcttttccaatgacccttacctcactgctagactttaccttccaaaactaacacaaaccaatgatcaaaaccaaaaactc |
672926 |
T |
|
| Q |
496 |
cctatcttagtctactttcatggtggtgcattttgttgtgaatcaacttttgcatcacatc-atcacaaatattgtaacattattgcttctcaaggaaat |
594 |
Q |
| |
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| T |
672927 |
tccatcttggtttatttttatggtggtgcattcagctttgaatcagcatattcatc-catccaccatgcatattgtaacctcttagcttctcaagcaaat |
673025 |
T |
|
| Q |
595 |
gttctaattttttctattgaatatagaaaagctccagaacattttcttccaatgcaa--tataatgattgttgggatggtctcaattgggttgcttctca |
692 |
Q |
| |
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|| | ||| ||| || ||| ||||||| |||||||| |||| |||||| |||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
673026 |
attttgattgcttccatagaacatagaaatgctccagagcattatcttcc--tgcaggttataatgattgttgggatggtctctattgggttgcttctca |
673123 |
T |
|
| Q |
693 |
taacactaccgttgaaaatgttccagaaaatagtgacccttggatcattaatcatggtgatttcaacaaagtttttattggtggtgatagcagtggtgca |
792 |
Q |
| |
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| ||| ||||| || ||| |||||||||||||| || ||||||||| ||||||| | |||||| |||||||||||||| ||||||| |
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| T |
673124 |
tgcaactc------aaaat---cccataaacagtgacccttggataatcaatcatggtaatttcaatagagttttcattggtggtgatagtagtggtggt |
673214 |
T |
|
| Q |
793 |
aatattgttcacaacattgctatgcgtgctggtgt |
827 |
Q |
| |
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||| || ||||||| ||||||||||||||||||| |
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| T |
673215 |
aatctttgtcacaacgttgctatgcgtgctggtgt |
673249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 739 - 824
Target Start/End: Original strand, 47301488 - 47301573
Alignment:
| Q |
739 |
attaatcatggtgatttcaacaaagtttttattggtggtgatagcagtggtgcaaatattgttcacaacattgctatgcgtgctgg |
824 |
Q |
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| T |
47301488 |
attaaccacggtgatttcaacagagttttcattggtggtgatagtgctggtggtaacatagttcataacatcgctatgcgtgctgg |
47301573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 739 - 824
Target Start/End: Original strand, 47304386 - 47304471
Alignment:
| Q |
739 |
attaatcatggtgatttcaacaaagtttttattggtggtgatagcagtggtgcaaatattgttcacaacattgctatgcgtgctgg |
824 |
Q |
| |
|
||||| |||||||||||||||| |||||| |||||||||| ||| ||||| || || ||||| ||||| |||||||||||||| |
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| T |
47304386 |
attaaccatggtgatttcaacagagttttcattggtggtgctagtgctggtggtaacatagttcataacatcgctatgcgtgctgg |
47304471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 739 - 824
Target Start/End: Original strand, 17841625 - 17841710
Alignment:
| Q |
739 |
attaatcatggtgatttcaacaaagtttttattggtggtgatagcagtggtgcaaatattgttcacaacattgctatgcgtgctgg |
824 |
Q |
| |
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||||| |||||||||||||||| |||||| ||||||||| ||| ||||| || || ||||| ||||| |||||||||||||| |
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| T |
17841625 |
attaaccatggtgatttcaacagagttttcattggtggtcctagttctggtggtaacatagttcataacatcgctatgcgtgctgg |
17841710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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