View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5557-Insertion-4 (Length: 748)
Name: NF5557-Insertion-4
Description: NF5557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5557-Insertion-4 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 627; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 627; E-Value: 0
Query Start/End: Original strand, 8 - 748
Target Start/End: Original strand, 38359435 - 38360173
Alignment:
| Q |
8 |
aaaatgtgtcttgaaatattcgaaatggggaaaaatattaacttctggattgattcctggtgtagagagcctttgacaattgcacttaacattcccccat |
107 |
Q |
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| T |
38359435 |
aaaatgtgtcttgaaatattggaaatggggaaaa-tattaacttctggattgattcctggtgtagagagcctttgacaactgcacttaacattcccccat |
38359533 |
T |
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| Q |
108 |
cttcatagtcatttacaagctactcttgatacttgcattcataattttaagtggagtgtctcctaagaaatcttagttgtttgcccagttttggaacaga |
207 |
Q |
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| T |
38359534 |
cttcatagtcatttacaagctactcttgatacttgcattcataattttaagtggagtgtctcctaagaaatcttagtcgtttgcctagttttggaacaga |
38359633 |
T |
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| Q |
208 |
agttgaaacttttgtccattcctaattcttacaaggaagataagctgatttggaagtcatctcatgatggaagtctctcctttaaagatgcatatcgttt |
307 |
Q |
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| T |
38359634 |
agttgaaacttttgtccattcctaattcttacaaggaagataagctgatttggaagccatctcatgatggaagtctctcctttaaagatgcatatcgttt |
38359733 |
T |
|
| Q |
308 |
tcatacttcccctcatcctcaaaacattagttgcgctgaaactatttggcatgctactattgcccccctccaagcctcttcttgtttggaggattcttct |
407 |
Q |
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| T |
38359734 |
tcatacttcccctcatcctcaaaacattagttgggctaaaactatttgtaatgctgctattgtccccctccaagcctcttcttgtttggaggattcttct |
38359833 |
T |
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| Q |
408 |
caacaagctccccacatatgacattcttgcgaaaagaggttgtttgcttccctctatttgttctctttgtggaaaaatcaagaaactcaatctcacatgt |
507 |
Q |
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| T |
38359834 |
caacaagctccccacagatgacattcttgcgaaaagaggttgtttgcttccctctattttttctctttgtggaaaaatcaagaaactcaatctcacatgt |
38359933 |
T |
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| Q |
508 |
tccttgaatgcactttctcttatgacatttgg-cctggttgtttcacattctcaaaatcacctgaaacttttcatgttttttggacatcataaggatagc |
606 |
Q |
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||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
38359934 |
tccgtgaatgcactttctcttatgacatttggtcctggttgtttcacattctcaaaatcacctgaaacttttcaagttttttggacatcataaggatagc |
38360033 |
T |
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| Q |
607 |
tgaaagaaattggtccccgcattgtagattggttgctctatctgccataattcacttcttcaacaccaactggttttgcataaaaccaaaagaagattta |
706 |
Q |
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| T |
38360034 |
taaaagaaattggtccccacaatgtagactggttgctctatctgccataattcactgcttcaacaccatctggttttgcataaa--ccaaagaagattta |
38360131 |
T |
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| Q |
707 |
atgctaagataatcaatgtcagatatgttgtcaacatggtta |
748 |
Q |
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| T |
38360132 |
atgctaagataatcaatgtcagatatgttgtcaacatggtta |
38360173 |
T |
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Back To:
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Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 300
Target Start/End: Complemental strand, 18526081 - 18525907
Alignment:
| Q |
126 |
gctactcttgatacttgcattcataattttaagtggagtgtctcctaagaaatcttagttgtttgcccagttttggaacagaagttgaaacttttgtcca |
225 |
Q |
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|||||||||||| ||| ||||| ||||||| | || ||||| | ||||||||||| ||| ||||||| || | | || || ||||| | |||| | |
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| T |
18526081 |
gctactcttgattcttatattcacaattttaggcggcgtgtccctcaagaaatcttaattgcttgcccaattcttcagcaaaaattgaagttggtgtcaa |
18525982 |
T |
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| Q |
226 |
ttcctaattcttacaaggaagataagctgatttggaagtcatctcatgatggaagtctctcctttaaagatgcat |
300 |
Q |
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| T |
18525981 |
ttcctaacacttacaaggaggataagcttatttggaagcaatctcatgatggtaacctatcatttaaagatgcat |
18525907 |
T |
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