View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5557-Insertion-5 (Length: 582)
Name: NF5557-Insertion-5
Description: NF5557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5557-Insertion-5 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 563; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 8 - 582
Target Start/End: Original strand, 47527655 - 47528229
Alignment:
| Q |
8 |
ggttaatcaagtctttcccgaaaaaatggccaaactagcccaccaacatggtttaaatgctgtgcctaaaggtagttgattgataacctcaatgacatga |
107 |
Q |
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| T |
47527655 |
ggttaatcaagtctttcccgaaaaaatggccaaactagcccaccaacatggtttaaatgctgtgcctaaaggtagttgattgataacctcaatgacatga |
47527754 |
T |
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| Q |
108 |
tttattttagataaggtagttaattttatgtttcatgacagacgcgaagaagatcagaagaacaaagaagcagaaagttaccagaaatcccaaacaagtt |
207 |
Q |
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| T |
47527755 |
tttattttagataaggtagttaattttatgtttcatgacagacgcgaagaagatcagaagaacaaagaagcagaaagttaccagaaatcccaaacaagtt |
47527854 |
T |
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| Q |
208 |
gacccacaactcgccctctccatcgagaatttgcaaaaaatccaagacgacctcgcagaggtactcttttttctcatttattcattcaactgaagctatt |
307 |
Q |
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| T |
47527855 |
gacccacaactcgccctctccatcgagaatttgcaaaaaatccaagacgaccttgcagaggtactcttttttctcatttattcattcaactgaagctatt |
47527954 |
T |
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| Q |
308 |
aacttacacaatgttttgattcccaaattaccttaacctgtgttataaaccatgactttaatcctcgagtgaggatttgctatttcattgttgttttgat |
407 |
Q |
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| T |
47527955 |
aacttacacaatgttttgatccccaaattaccttaacctgtgttataaaccatgactttaatcctcgagtgaggatttgctatttcattgttgttttgat |
47528054 |
T |
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| Q |
408 |
tatgaatttgtgagttgttgtgtagctcaatgacaaaaaatatgatcagctacgtgaaattgagcagaagttaaatgagactatagatcccgtttacatt |
507 |
Q |
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| T |
47528055 |
tatgaatttgtgagttgttgtgtagctcaatgacaaaaaatatgatcagctacgtgaaattgagcagaagttaaatgagactatagatcccgtttacatt |
47528154 |
T |
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| Q |
508 |
aagcgggatgagatgatcaaatctattcctaacttctggttgaatgctgtgggtattttctatctacatgttttc |
582 |
Q |
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| T |
47528155 |
aagcgggatgagatgatcaaatctattcctaacttctggttgaatgctgtgagtattttctatctacatgttttc |
47528229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 463 - 566
Target Start/End: Complemental strand, 44983980 - 44983877
Alignment:
| Q |
463 |
gaaattgagcagaagttaaatgagactatagatcccgtttacattaagcgggatgagatgatcaaatctattcctaacttctggttgaatgctgtgggta |
562 |
Q |
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| T |
44983980 |
gaaattgagcagaagtataatgagattaggaagccggtttacgataagcggaacgagattatcaaatctattcctgatttctggttgaatgctgtgagta |
44983881 |
T |
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| Q |
563 |
tttt |
566 |
Q |
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|||| |
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| T |
44983880 |
tttt |
44983877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 166 - 271
Target Start/End: Complemental strand, 44984261 - 44984156
Alignment:
| Q |
166 |
agaacaaagaagcagaaagttaccagaaatcccaaacaagttgacccacaactcgccctctccatcgagaatttgcaaaaaatccaagacgacctcgcag |
265 |
Q |
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||||| |||||||||||| | ||| ||||||| || |||||||| | ||||| ||||||||||||||| |||||| | |||||||| ||||||| | |
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| T |
44984261 |
agaaccaagaagcagaaactcaccgaaaatcccgaagaagttgacgctgaactcatcctctccatcgagaaattgcaagagatccaagatgacctcgaaa |
44984162 |
T |
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| Q |
266 |
aggtac |
271 |
Q |
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|||||| |
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| T |
44984161 |
aggtac |
44984156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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