View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5557-Insertion-6 (Length: 504)
Name: NF5557-Insertion-6
Description: NF5557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5557-Insertion-6 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 8 - 504
Target Start/End: Complemental strand, 26414507 - 26414014
Alignment:
| Q |
8 |
agaactggtgactcactgcgttgaattacttttattattcacaagaaatggttgtgttctgccagtggggcatgaactacaccagagtccaaaatgatga |
107 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26414507 |
agaactggtgactcactgctttgaattacttttattattcacaagaaatggttgtgttctgccagtggggcatgaactacaccagagtccaaaatgatga |
26414408 |
T |
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| Q |
108 |
acaaaactgaaaatgatgaatgctcacaggttatcgttttattattatttttatagcttttcctatcactgcctttgattttgcggtgtatatatctttg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
26414407 |
acaaaactgaaaatgatgaatgctcacaggttatcgttttattattatttttatagcttttcctatcactacctttgattttgcggtgtatatatctttg |
26414308 |
T |
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| Q |
208 |
cactgatgcaaatatgtatttttattattaatttaagaaatgacaagaactatgatactgtgttaaattaatgcagatgattttcattttcgttcgtagc |
307 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
26414307 |
cactgatgcaaatatgtatttttatta---atttaagaaatgacaagaactatgatactgtgttaaattaatgcagatgattttcattttggttcgtagc |
26414211 |
T |
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| Q |
308 |
tgatatgtttggggtgtacaatgtattgattggttcatagcctctgctagccccaccggtgactaatttaacccatatcgcgttttaggcagatcccaga |
407 |
Q |
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| T |
26414210 |
tcatatgtttggggtgtacaatgtattgattggttcatagcctctgctagccccaccggtgactaatttaacctatatcgcgctttaggcagatcccaga |
26414111 |
T |
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| Q |
408 |
caatccgaatctgctgctatgtccatagctaattatagaacctgcagcctgtgccatacgataatcctcaagtctgaatttgtttcttgatgcttct |
504 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
26414110 |
caatccgaatctgctgctatgtccatagctaattatagaacctgcagcctgtgccatacgataatcctcaagtctgaatttttttcttgatgcttct |
26414014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 154 - 342
Target Start/End: Original strand, 27986615 - 27986795
Alignment:
| Q |
154 |
atttttatagcttttcctatcactgcctttgattttgcggtgtata--tatctttgcactgatgcaaatatgtatttttattattaatttaagaaatgac |
251 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||| |||||||||||| || ||||||||||||| |||||||||||||| || || |
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| T |
27986615 |
atttttatagcttttcctata----ccttagattttgcggtgtatatatatctttgcacttatacaaatatgtattt---ttattaatttaagacattac |
27986707 |
T |
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| Q |
252 |
aagaactatgatactgtgttaaattaatgcagatgattttcattttcgttcgtagctgatatgtttggggtgtacaatgtattgattggtt |
342 |
Q |
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| T |
27986708 |
aagaactgtgatcct---cccacctaatgcaaatgattttcattttggttcttagctgatctgtttgttgcgtacaatgtattgattggtt |
27986795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 154 - 342
Target Start/End: Original strand, 28073147 - 28073327
Alignment:
| Q |
154 |
atttttatagcttttcctatcactgcctttgattttgcggtgtata--tatctttgcactgatgcaaatatgtatttttattattaatttaagaaatgac |
251 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||| |||||||||||| || ||||||||||||| |||||||||||||| || || |
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| T |
28073147 |
atttttatagcttttcctata----ccttagattttgcggtgtatatatatctttgcacttatacaaatatgtattt---ttattaatttaagacattac |
28073239 |
T |
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| Q |
252 |
aagaactatgatactgtgttaaattaatgcagatgattttcattttcgttcgtagctgatatgtttggggtgtacaatgtattgattggtt |
342 |
Q |
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||||||| |||| || | ||||||| |||||||||||||| |||| |||||||| |||||| | |||||||||||||||||||| |
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| T |
28073240 |
aagaactgtgatcct---cccacctaatgcaaatgattttcattttggttcttagctgatctgtttgttgcgtacaatgtattgattggtt |
28073327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 27986512 - 27986572
Alignment:
| Q |
8 |
agaactggtgactcactgcgttgaattacttttattattcacaagaaatggttgtgttctg |
68 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
27986512 |
agaactggtgattcactgcgttgaattacttttattattcacaataaatggttgtgttctg |
27986572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 28073044 - 28073104
Alignment:
| Q |
8 |
agaactggtgactcactgcgttgaattacttttattattcacaagaaatggttgtgttctg |
68 |
Q |
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| T |
28073044 |
agaactggtgattcactgcgttgaattacttttattattcacaataaatggttgtgttctg |
28073104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 391 - 483
Target Start/End: Complemental strand, 1536743 - 1536650
Alignment:
| Q |
391 |
tttaggcagatcccagacaatccgaatctgctgc-tatgtccatagctaattatagaacctgcagcctgtgccatacgataatcctcaagtctg |
483 |
Q |
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||||||| ||||||| |||| ||||| ||||| |||||| ||||||||||| |||||||| |||||||||||| |||||||||||||||| |
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| T |
1536743 |
tttaggcggatcccaatcaattcgaataggctgcctatgtctgtagctaattatggaacctgccgcctgtgccatataataatcctcaagtctg |
1536650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 195 - 266
Target Start/End: Complemental strand, 3417170 - 3417101
Alignment:
| Q |
195 |
gtatatatctttgcactgatgcaaatatgtatttttattattaatttaagaaatgacaagaactatgatact |
266 |
Q |
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| T |
3417170 |
gtatatatatttgcatctatacaaatatgtattttt--tattaatttaagaaatgacaagaactatgctact |
3417101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 266
Target Start/End: Original strand, 22022568 - 22022602
Alignment:
| Q |
232 |
ttattaatttaagaaatgacaagaactatgatact |
266 |
Q |
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|||||||||||||||||||||||||||||| |||| |
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| T |
22022568 |
ttattaatttaagaaatgacaagaactatgctact |
22022602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 266
Target Start/End: Original strand, 44472480 - 44472527
Alignment:
| Q |
216 |
caaatatgtatttttattattaatttaagaaatgacaagaactatgatact |
266 |
Q |
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||||||||||||||||| |||||||||||||||||||||| ||| |||| |
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| T |
44472480 |
caaatatgtatttttat---taatttaagaaatgacaagaaccatgctact |
44472527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 266
Target Start/End: Complemental strand, 6507954 - 6507907
Alignment:
| Q |
216 |
caaatatgtatttttattattaatttaagaaatgacaagaactatgatact |
266 |
Q |
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| T |
6507954 |
caaatatgtatttttatta---atttaagaaatgacaagaaccatgctact |
6507907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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