View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5557_high_1 (Length: 691)
Name: NF5557_high_1
Description: NF5557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5557_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 622; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 622; E-Value: 0
Query Start/End: Original strand, 14 - 681
Target Start/End: Complemental strand, 47501857 - 47501198
Alignment:
| Q |
14 |
caaatttaaataatttaattagttcccgctgagatatttatttcatagtgtacttttattgggcaataaggtctcaaattagatgacattgaaaaaacaa |
113 |
Q |
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| T |
47501857 |
caaatttaaataattta----gttctcgctgagatatttatttcatattgtacttttattgggcaataaggtctcaaattagatgacattgaaaaaacaa |
47501762 |
T |
|
| Q |
114 |
gcaaatatatatgaagataatacacgcacgcacccaataagcagcagtaaaaccagcaacaccagcagagaggtgaataacatatcccccagcaaaatca |
213 |
Q |
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| T |
47501761 |
gcaaatatatatgaagataatacacgcac----ccaataagcagcagtaaaaccagcaacaccagcagagaggtgaataacatatcccccagcaaaatca |
47501666 |
T |
|
| Q |
214 |
ataaccccacgtttagccaaccaaccatcaggacaccaaatactaaaggcaacaacagtgtacgagaatgtaacccaaagtggcacaaacaacatccatg |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47501665 |
ataaccccacgtttagccaaccaaccatcaggacaccaaatactaaaggcaacaacagtgtacgagaatgtaacccaaagtggcacaaacaacatccatg |
47501566 |
T |
|
| Q |
314 |
cacgaatgttcattctcccaagtaaagcaccagctatcaaaatcaaagtaagaccagcgaaaacaccttgataaaataccattgtagcattaggaaaatt |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47501565 |
cacgaatgttcattctcccaagtaaagcaccagctatcaaaatcaaagtaagaccagcgaaaacaccttgataaaataccattgtagcattaggaaaatt |
47501466 |
T |
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| Q |
414 |
ccccaaaaatgctttccccaacaaaaacttttcatctaatgctacatttggtttccctaagaaaaataccattttctccccaaatgacatttggtatgcc |
513 |
Q |
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| T |
47501465 |
ccccaaaaatgctttccccaacaaaaacttttcatctaatgctacatttggtttccctaagaaaaataccattttctccccaaatgacatttggtatgcc |
47501366 |
T |
|
| Q |
514 |
catgaaacccaacaaaggagaacggatgcaaatgcatagaaggccatgaaagctgagtttatagcccatgttttcttcactaggcttccgtaaagtatga |
613 |
Q |
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| T |
47501365 |
catgaaacccaacaaaggagaacggatgcaaatgcatagaaggccatgaaagctgagtttatagcccatgttttcttcactaggcttccgtaaagtatga |
47501266 |
T |
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| Q |
614 |
caagcccgggaatgctttgaagcccaaccattgttgctgctgttaactgccatgcgttgtcccctttg |
681 |
Q |
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| T |
47501265 |
caagcccgggaatgctttgaagcccaaccattgttgctgctgttaattgccatgcgttgtcccctttg |
47501198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 145 - 215
Target Start/End: Original strand, 25670924 - 25670994
Alignment:
| Q |
145 |
acccaataagcagcagtaaaaccagcaacaccagcagagaggtgaataacatatcccccagcaaaatcaat |
215 |
Q |
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| T |
25670924 |
acccaataagcagcagtgaaaccagcaattccagaagaaagatgaataacataaccaccagaataatcaat |
25670994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 249 - 410
Target Start/End: Original strand, 13349950 - 13350111
Alignment:
| Q |
249 |
ccaaatactaaaggcaacaacagtgtacgagaatgtaacccaaagtggcacaaacaacatccatgcacgaatgttcattctcccaagtaaagcaccagct |
348 |
Q |
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|||||||||||| ||| || |||||| ||||| || | ||| | |||||||||| |||||| ||| | |||||||||||| | | |||||||||| |
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| T |
13349950 |
ccaaatactaaaagcagtaaaagtgtaagagaaagtgagccataaaggcacaaacatcatccaagcatagaagttcattctccccaacacagcaccagct |
13350049 |
T |
|
| Q |
349 |
atcaaaatcaaagtaagaccagcgaaaacaccttgataaaataccattgtagcattaggaaa |
410 |
Q |
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| T |
13350050 |
atcaaaatcaaagtaatagcagcaaaaacacattgaaaataaatcatagtagcatttggaaa |
13350111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 511 - 674
Target Start/End: Complemental strand, 31605872 - 31605709
Alignment:
| Q |
511 |
gcccatgaaacccaacaaaggagaacggatgcaaatgcatagaaggccatgaaagctgagtttatagcccatgttttcttcactaggcttccgtaaagta |
610 |
Q |
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|||||| |||||||||||| || || | ||||||||||| | |||||||||||| || |||| |||||| ||||||| || | ||| || || |||| |
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| T |
31605872 |
gcccataaaacccaacaaactagtacagcagcaaatgcatatagggccatgaaagccgaatttacggcccattttttcttaaccatgctgccatagagta |
31605773 |
T |
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| Q |
611 |
tgacaagcccgggaatgctttgaagcccaaccattgttgctgctgttaactgccatgcgttgtc |
674 |
Q |
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| T |
31605772 |
ttacaagcccaggaacagtttgaaggcctactaatgttgctgctgttagttgccatgcattgtc |
31605709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 145 - 215
Target Start/End: Complemental strand, 31606235 - 31606165
Alignment:
| Q |
145 |
acccaataagcagcagtaaaaccagcaacaccagcagagaggtgaataacatatcccccagcaaaatcaat |
215 |
Q |
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||||||||||||||||| ||||| |||||||||| ||| || ||||| ||| | ||||| ||| ||||||| |
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| T |
31606235 |
acccaataagcagcagtgaaacctgcaacaccagaagatagatgaattacaaaccccccggcataatcaat |
31606165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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