View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5557_high_12 (Length: 355)

Name: NF5557_high_12
Description: NF5557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5557_high_12
NF5557_high_12
[»] chr2 (3 HSPs)
chr2 (1-333)||(15026037-15026374)
chr2 (1-329)||(15015486-15015819)
chr2 (51-162)||(15021445-15021556)


Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 15026037 - 15026374
Alignment:
Q  1 tccatttttgtgttattcatatcatgcggatcagttgacatctggctgtgatcattgtaattgattgaagactattt-----agccaactttgattgaac 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||    
T  15026037 tccatttttgtgttattcatatcatgcggatcagttgacatctggctgtgatcattgtaattgattgaagactatttaatttagccaactttgattgaac 15026136  T
Q  96 gaaaaaggcaagcaagaattaagtcacattttccctctgtcaaattctctttctgtctggagttctgtgtcttatcaccttcccgttgtatgatcggttt 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  15026137 gaaaaaggcaagcaagaattaagtcacattttccctctgtcaaattctctttctgtctggagttctgtgtcttatcaccttcccgttgtatgatgggttt 15026236  T
Q  196 tgtttgattgcattttaaagagtacagctttacatgttacttgttaaagtgaaaacacgatattatgtgcataccatgtagttgattgtgcagtttgtaa 295  Q
    || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  15026237 tggttgattgcattttaaagagtacagctttacatgttacatgttaaagtgaaaacacgatattatgtgcataccatgtagttgattgtgcagtttgtat 15026336  T
Q  296 atttctgatatattatacaattagatttttcacaggtt 333  Q
    |||||||||||||||||| |||||||||||||||||||    
T  15026337 atttctgatatattatacgattagatttttcacaggtt 15026374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 15015486 - 15015819
Alignment:
Q  1 tccatttttgtgttattcatatcatgcggatcagttgacatctggctgtgatcattgtaattgattgaagactatttagccaactttgattgaacgaaaa 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  15015486 tccatttttgtgttattcatatcatgcggatctgttgacatctggctgtgatcattgtaattgattgaagactatttagctaactttgattgaacgaaaa 15015585  T
Q  101 aggcaagcaagaattaagtcacattttccctctgtcaaattctctttctgtctgg------agttctgtgtcttatcaccttcccgttgtatgatcggtt 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||      | |||||||||||||||||||||| ||||||||| ||||    
T  15015586 aggcaagcaagaattaagtcacattttccctctgtcaaattctctttctgtttggacttctatttctgtgtcttatcaccttcccattgtatgatgggtt 15015685  T
Q  195 ttgtttgattgcattttaaagagtacagctttacatgttacttgttaaagtgaaaacacgatattatgtgcataccatgtagttgattgtgcagtttgta 294  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||| || |||||||||| |||||||||||||| || |||||||||||||||||||||    
T  15015686 ttgtttgattgcattttaaagagtacagcttcacatgttacatgtt-aactgaaaacacggtattatgtgcatacaatttagttgattgtgcagtttgta 15015784  T
Q  295 aatttctgatatattatacaattagatttttcaca 329  Q
    |||||||||||||||||||||||||||||||||||    
T  15015785 aatttctgatatattatacaattagatttttcaca 15015819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 51 - 162
Target Start/End: Original strand, 15021445 - 15021556
Alignment:
Q  51 atcattgtaattgattgaagactatttagccaactttgattgaacgaaaaaggcaagcaagaattaagtcacattttccctctgtcaaattctctttctg 150  Q
    ||||||||||||||||| || |||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||     
T  15021445 atcattgtaattgattgtaggctatttagtcaactttgattgaatgaaaaaggcgagcaagaattaagtcacattttccctctgtcaaattctccttctt 15021544  T
Q  151 tctggagttctg 162  Q
    ||| ||||||||    
T  15021545 tcttgagttctg 15021556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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