View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5557_high_14 (Length: 345)
Name: NF5557_high_14
Description: NF5557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5557_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 35 - 329
Target Start/End: Complemental strand, 43977180 - 43976886
Alignment:
| Q |
35 |
gactaccaaaagaggtccttgtccttgacttccatttcttgatatgtaagaaacagaaactctagtagtctagaagaaaattgccaaatcagaaactcca |
134 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
43977180 |
gactaccaaaagaggtccttgtccttgacttccatttcttggcatgtaagaaacagaaactctagtagtctagaagaaaattgtcaaatcagaaactcca |
43977081 |
T |
|
| Q |
135 |
ccagcctcttcaatccaaggaacattgagagacaattttccatcacacaaccactcaaaagccacttcagaaccattcaattggcacttctttggtgatt |
234 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
43977080 |
ccagcctcttcaatccaaggaacattgaaagacaattttccatcactcaaccactcaaaagccacttcagaaccattcaattgacacttctctggtgatt |
43976981 |
T |
|
| Q |
235 |
catttgaataagcaaggaaattcccactacctttaaccttaatcttagcacaacattcaacatattccaaatctagaattgttccaccactgttg |
329 |
Q |
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|||||||||||||||||||||| |||| |||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
43976980 |
catttgaataagcaaggaaatttccaccacctttaaccttgatcatagcacaactttcaacatattccaaatctagaattgttccaccactgttg |
43976886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 95 - 329
Target Start/End: Original strand, 43561892 - 43562126
Alignment:
| Q |
95 |
tctagtagtctagaagaaaattgccaaatcagaaactccaccagcctcttcaatccaaggaacattgagagacaattttccatcacacaaccactcaaaa |
194 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||| | |||||||||| |
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| T |
43561892 |
tctagtagtctagaagaaaattgccaaatcagaaacaccacaagcctcttcaatccaaggaacattgagagataattttccatcacctagccactcaaaa |
43561991 |
T |
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| Q |
195 |
gccacttcagaaccattcaattggcacttctttggtgattcatttgaataagcaaggaaattcccactacctttaaccttaatcttagcacaacattcaa |
294 |
Q |
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| T |
43561992 |
tccacattagaaccattcagttgaaacttctttggtgattcacttgaataagcaaggaaattcccaccacctttaaccttaatcttagcaccactttcaa |
43562091 |
T |
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| Q |
295 |
catattccaaatctagaattgttccaccactgttg |
329 |
Q |
| |
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||||||||||||| ||||||||||||||||||||| |
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| T |
43562092 |
catattccaaatcaagaattgttccaccactgttg |
43562126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 132 - 325
Target Start/End: Complemental strand, 44957140 - 44956947
Alignment:
| Q |
132 |
ccaccagcctcttcaatccaaggaacattgagagacaattttccatcacacaaccactcaaaagccacttcagaaccattcaattggcacttctttggtg |
231 |
Q |
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||||||||||| |||||||||||||||||||||| ||| ||| |||||| || ||||||||| ||||||||| ||||||||||||| |||||||||||| |
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| T |
44957140 |
ccaccagcctcatcaatccaaggaacattgagagtcaacttttcatcacccatccactcaaacgccacttcaaaaccattcaattgaaacttctttggtg |
44957041 |
T |
|
| Q |
232 |
attcatttgaataagcaaggaaattcccactacctttaaccttaatcttagcacaacattcaacatattccaaatctagaattgttccaccact |
325 |
Q |
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||||| |||||||||||||||||||||||| |||||||||||||||||| |||| || |||||||||||||||||| ||||||||||||||||| |
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| T |
44957040 |
attcacttgaataagcaaggaaattcccaccacctttaaccttaatctttgcaccactttcaacatattccaaatcaagaattgttccaccact |
44956947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 95 - 329
Target Start/End: Original strand, 36429619 - 36429853
Alignment:
| Q |
95 |
tctagtagtctagaagaaaattgccaaatcagaaactccaccagcctcttcaatccaaggaacattgagagacaattttccatcacacaaccactcaaaa |
194 |
Q |
| |
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||||||| ||||||||||||||||||| ||||| || |||| ||||||||||||||||| |||||||||||||| ||||||||||| || |||||||||| |
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| T |
36429619 |
tctagtactctagaagaaaattgccaattcagacacaccactagcctcttcaatccaagaaacattgagagacagttttccatcacccagccactcaaaa |
36429718 |
T |
|
| Q |
195 |
gccacttcagaaccattcaattggcacttctttggtgattcatttgaataagcaaggaaattcccactacctttaaccttaatcttagcacaacattcaa |
294 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||| ||||||||||| ||||||||||| || ||| |
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| T |
36429719 |
gccacttcagaaccattcaattgaaacttctttggtgattcacttgaataagcaaggaaatttccaccacctttaacctgaatcttagcaccactctcag |
36429818 |
T |
|
| Q |
295 |
catattccaaatctagaattgttccaccactgttg |
329 |
Q |
| |
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|||||||||||||||||| |||||||||||||||| |
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| T |
36429819 |
catattccaaatctagaactgttccaccactgttg |
36429853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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