View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5557_high_17 (Length: 320)
Name: NF5557_high_17
Description: NF5557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5557_high_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 15026037 - 15026343
Alignment:
| Q |
1 |
tccatttttgtgttattcatatcatgcggatcagttgacatctggctgtgatcattgtaattgattgaagactattt-----agccaactttgattgaac |
95 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
15026037 |
tccatttttgtgttattcatatcatgcggatcagttgacatctggctgtgatcattgtaattgattgaagactatttaatttagccaactttgattgaac |
15026136 |
T |
|
| Q |
96 |
gaaaaaggcaagcaagaattaagtcacattttccctctgtcaaattctctttctgtctggagttctgtgtcttatcaccttcccgttgtatgatcggttt |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
15026137 |
gaaaaaggcaagcaagaattaagtcacattttccctctgtcaaattctctttctgtctggagttctgtgtcttatcaccttcccgttgtatgatgggttt |
15026236 |
T |
|
| Q |
196 |
tgtttgattgcattttaaagagtacagctttacatgttacttgttaaagtgaaaacacgatattatgtgcataccatgtagttgattgtgcagtttgtaa |
295 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15026237 |
tggttgattgcattttaaagagtacagctttacatgttacatgttaaagtgaaaacacgatattatgtgcataccatgtagttgattgtgcagtttgtat |
15026336 |
T |
|
| Q |
296 |
atttctg |
302 |
Q |
| |
|
||||||| |
|
|
| T |
15026337 |
atttctg |
15026343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 15015486 - 15015792
Alignment:
| Q |
1 |
tccatttttgtgttattcatatcatgcggatcagttgacatctggctgtgatcattgtaattgattgaagactatttagccaactttgattgaacgaaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
15015486 |
tccatttttgtgttattcatatcatgcggatctgttgacatctggctgtgatcattgtaattgattgaagactatttagctaactttgattgaacgaaaa |
15015585 |
T |
|
| Q |
101 |
aggcaagcaagaattaagtcacattttccctctgtcaaattctctttctgtctgg------agttctgtgtcttatcaccttcccgttgtatgatcggtt |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
15015586 |
aggcaagcaagaattaagtcacattttccctctgtcaaattctctttctgtttggacttctatttctgtgtcttatcaccttcccattgtatgatgggtt |
15015685 |
T |
|
| Q |
195 |
ttgtttgattgcattttaaagagtacagctttacatgttacttgttaaagtgaaaacacgatattatgtgcataccatgtagttgattgtgcagtttgta |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |||| || |||||||||| |||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
15015686 |
ttgtttgattgcattttaaagagtacagcttcacatgttacatgtt-aactgaaaacacggtattatgtgcatacaatttagttgattgtgcagtttgta |
15015784 |
T |
|
| Q |
295 |
aatttctg |
302 |
Q |
| |
|
|||||||| |
|
|
| T |
15015785 |
aatttctg |
15015792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 51 - 162
Target Start/End: Original strand, 15021445 - 15021556
Alignment:
| Q |
51 |
atcattgtaattgattgaagactatttagccaactttgattgaacgaaaaaggcaagcaagaattaagtcacattttccctctgtcaaattctctttctg |
150 |
Q |
| |
|
||||||||||||||||| || |||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
15021445 |
atcattgtaattgattgtaggctatttagtcaactttgattgaatgaaaaaggcgagcaagaattaagtcacattttccctctgtcaaattctccttctt |
15021544 |
T |
|
| Q |
151 |
tctggagttctg |
162 |
Q |
| |
|
||| |||||||| |
|
|
| T |
15021545 |
tcttgagttctg |
15021556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University