View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5557_high_18 (Length: 319)
Name: NF5557_high_18
Description: NF5557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5557_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 58 - 312
Target Start/End: Original strand, 6335266 - 6335520
Alignment:
| Q |
58 |
gaccaggtgttacgctgaggcaaaggatcaagatgcagtagtatataaatttcgaggaaaataattttcaatgtttgattattgattttggctagttaga |
157 |
Q |
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| T |
6335266 |
gaccaggtgttacgctgaggcaaaggatcaagatgcagtagtatataaatttcgaggaaattaattttcaatgtttgattattgattttggctagttaga |
6335365 |
T |
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| Q |
158 |
acacattcacattactcaaaataattagaatttaaaaacaaagagacaggtttgaattcgattgattaatgggtcgtgagtgtaagggaaagttaaatgt |
257 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6335366 |
acacattcacattactcaaaataattagaatttaaaaacaaagaaacaggtttgaattcgattgattaatgggtcgtgagtgtaagggaaagttaaatgt |
6335465 |
T |
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| Q |
258 |
gagaaaacctcacttctatcacctctttaacccttcttcaacctctcaatctctg |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6335466 |
gagaaaacctcacttctatcacctctttaacccttcttcaacctctcaatctctg |
6335520 |
T |
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