View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5557_high_19 (Length: 300)
Name: NF5557_high_19
Description: NF5557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5557_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 9 - 285
Target Start/End: Complemental strand, 42535278 - 42535002
Alignment:
| Q |
9 |
acatcatcaaatttcacaacaaaagactctgactgaaaaagatcaaaaccggcatccggcttggccctccttatgtcttcaatgcgtgttgatctgtatt |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42535278 |
acatcatcaaatttcacaacaaaagactctgactgaaaaagatcaaaaccggcatccggcttggccctccttatgtcttcaatgcgtgttgatctgtatt |
42535179 |
T |
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| Q |
109 |
cctccggcatcctacttcggcttgacactgtaataagtgagtcattgttcttgttgtagaagagtctcctgatgaggtcgttaggatgcagattcataaa |
208 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42535178 |
cctccggcatcctacttcggcttgacgctgtaataagtgagtcattgttcttgttgtagaagagtctcctgatgaggtcgttaggatgcagattcataaa |
42535079 |
T |
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| Q |
209 |
gcaaatcctctcatctgtttcactactaaaagctgcacaaagaccagattcggcaagaacaaatacaatgtttttag |
285 |
Q |
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| T |
42535078 |
gcaaatcctctcatctgtttcactactaaaagctgcacaaagaccagattcggcaagaacaaatacaatgtttttag |
42535002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 9 - 108
Target Start/End: Complemental strand, 42529556 - 42529457
Alignment:
| Q |
9 |
acatcatcaaatttcacaacaaaagactctgactgaaaaagatcaaaaccggcatccggcttggccctccttatgtcttcaatgcgtgttgatctgtatt |
108 |
Q |
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|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| | |||||||||||||| |
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| T |
42529556 |
acatcatcaaattttacaacaaaagaatctgactgaaaaagatcaaaaccggcatccggcttggccctccttgtgtattcaatacttgttgatctgtatt |
42529457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 132 - 229
Target Start/End: Complemental strand, 27821939 - 27821842
Alignment:
| Q |
132 |
gacactgtaataagtgagtcattgttcttgttgtagaagagtctcctgatgaggtcgttaggatgcagattcataaagcaaatcctctcatctgtttc |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || | ||||| |||| ||| | ||||| ||||||||||||||||| |||||| |
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| T |
27821939 |
gacactgtaataagtgagtcattgttcttgttgtagaagaggctgcggatgacttcgtcagggcagatattcaaaaagcaaatcctctcatttgtttc |
27821842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 27822138 - 27822084
Alignment:
| Q |
30 |
aaagactctgactgaaaaagatcaaaaccggcatccggcttggccctccttatgt |
84 |
Q |
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|||||||| ||||| |||||| |||||| |||||||||||||||||| |||||| |
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| T |
27822138 |
aaagactcggactggaaaagaggaaaaccagcatccggcttggccctctttatgt |
27822084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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