View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5557_high_23 (Length: 256)
Name: NF5557_high_23
Description: NF5557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5557_high_23 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 15015270 - 15015509
Alignment:
| Q |
1 |
gaaacttacagaccaatgttgcgcctcattagacatctaaaaaacaaaaccaacaatacgatgaaggaggatcatgagaacagggttgatgaactacaat |
100 |
Q |
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| T |
15015270 |
gaaacttacagaccaatgttgcgcctcattagacatctaaaaaacaaaaccaacaatacgatgaaggaggatcatgagaacagggttgatgaactacaat |
15015369 |
T |
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| Q |
101 |
atatttttatcaacaatggatcacgtttcctttagcttgccatagcattttcactaatttccttcgctctacattctgttagaacggatttgtcattttc |
200 |
Q |
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| T |
15015370 |
atatttt-atcaacaatggatcacgtttcctttagcttgccatagcattttcactaatttccttcgctttacattctgttagaacggatttgtcattttc |
15015468 |
T |
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| Q |
201 |
ccttgctgcaatttgattccatttttgtgttattcatatca |
241 |
Q |
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| T |
15015469 |
ccttgctgcaatttgattccatttttgtgttattcatatca |
15015509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 15025822 - 15026060
Alignment:
| Q |
1 |
gaaacttacagaccaatgttgcgcctcattagacatctaaaaaacaaaaccaacaatacgatgaaggaggatcatgagaacagggttgatgaactacaat |
100 |
Q |
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||||| || ||||||||||||||||||||| ||||| ||||||||||||||||||| | |||||||| |||||||| ||||||||||||||||| ||||| |
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| T |
15025822 |
gaaacgtaaagaccaatgttgcgcctcatttgacatgtaaaaaacaaaaccaacaaaatgatgaagggggatcatgggaacagggttgatgaacaacaat |
15025921 |
T |
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| Q |
101 |
atatttttatcaacaatggatcacgtttcctttagcttgccatagcattttcactaatttccttcgctctacattctgttagaacggatttgtcattttc |
200 |
Q |
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| T |
15025922 |
atattt--atcaacaacggatcacgtttcctctagcttgccatatcattttcactaatttccttcgctttacattctgttagaacggatttgtcattttc |
15026019 |
T |
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| Q |
201 |
ccttgctgcaatttgattccatttttgtgttattcatatca |
241 |
Q |
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| T |
15026020 |
ccttgctgcaatttgattccatttttgtgttattcatatca |
15026060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 15021271 - 15021433
Alignment:
| Q |
1 |
gaaacttacagaccaatgttgcgcctcattagacatctaaaaaacaaaaccaacaatacgatgaaggaggatcatgagaacagggttgatgaactacaat |
100 |
Q |
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|||| ||| ||| ||||||||| ||||||| ||| ||||||||||||| ||||||| |||||||| |||||||| |||||| |||| ||||| ||||| |
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| T |
15021271 |
gaaatttatagagcaatgttgcacctcatttttcatgtaaaaaacaaaactaacaatatgatgaagggggatcatgggaacagagttggtgaacaacaat |
15021370 |
T |
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| Q |
101 |
atatttttatcaacaatggatcacgtttcctttagcttgccatagcattttcactaatttcctt |
164 |
Q |
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| T |
15021371 |
atagttt-atcaacaagggatcacgtatcctttagcttgccatagcattttcactaatttcctt |
15021433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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