View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5557_high_25 (Length: 252)
Name: NF5557_high_25
Description: NF5557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5557_high_25 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 39581658 - 39581429
Alignment:
| Q |
19 |
aacggcccagaagatttacagcagacacttttatcagagatgtttgagcagccagaaaccgagctgggaagtacaagtaaaggaatctatgaaataaaat |
118 |
Q |
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| T |
39581658 |
aacggcccagaagatttacaccagacacttttaccagagatgtttgagcagccagaaaccgagctgggaag-ataagtaaaggaatctatgaaataaaat |
39581560 |
T |
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| Q |
119 |
acaagcttggaaggaaaaaggttctgttggttcttgatgatgttgatgagatggaacaaataggaaatttggcaggaggaagtgattggtttggtccagg |
218 |
Q |
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| T |
39581559 |
acaagcttggaaggaaaaaggttctgttggttcttgatgatgttgatgagatggaacaaataggaaatttggcaggaggaagtgattggtttggtccagg |
39581460 |
T |
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| Q |
219 |
tagtagggtcattataactacaagggacaaa |
249 |
Q |
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| T |
39581459 |
tagtacggtcattataactacaagggacaaa |
39581429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 41 - 249
Target Start/End: Original strand, 39620323 - 39620531
Alignment:
| Q |
41 |
agacacttttatcagagatgtttgagcagccagaaaccgagctgggaagtacaagtaaaggaatctatgaaataaaatacaagcttggaaggaaaaaggt |
140 |
Q |
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| T |
39620323 |
agacacttttatcagagatgtttgagaagccagataccgatctgggaagtacaagtaaaggaatcaaagaaataaagcaaaagctgggcaataaaaaggt |
39620422 |
T |
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| Q |
141 |
tctgttggttcttgatgatgttgatgagatggaacaaataggaaatttggcaggaggaagtgattggtttggtccaggtagtagggtcattataactaca |
240 |
Q |
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| T |
39620423 |
tcttttggttcttgatgacgttgataacaaagaacaattaaaaaatttggcaggaggaagtgattggtttggcccaggtagtaggatcattataactaca |
39620522 |
T |
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| Q |
241 |
agggacaaa |
249 |
Q |
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| T |
39620523 |
agggacaaa |
39620531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 245
Target Start/End: Original strand, 7827978 - 7828036
Alignment:
| Q |
187 |
ttggcaggaggaagtgattggtttggtccaggtagtagggtcattataactacaaggga |
245 |
Q |
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| T |
7827978 |
ttggctggaggacgtgattggtttggttctggtagtaggatcataataacaacaaggga |
7828036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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