View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5557_high_5 (Length: 442)
Name: NF5557_high_5
Description: NF5557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5557_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 11 - 401
Target Start/End: Complemental strand, 1164095 - 1163704
Alignment:
| Q |
11 |
cataggcaatttttcttgaagcagagcagattaataagacattaacggaacatggtatgtttataaactaggtatttcattatatgaactccttctgtgc |
110 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1164095 |
cataggcaatttttcttgaagcagtgcagattaataagacattaacggaacatggtatgtttataaactaggtatttcattgtatgaactccttctgtgc |
1163996 |
T |
|
| Q |
111 |
ttgttctatcaagcagcgatgcttaagttcttcttccctaat-ctcattcccatgaaactcaagctccggcttcatgtcggcatctatgatttctatcat |
209 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1163995 |
ttgttctatcaagcagcgatgcttaagttctttttccctaattctcattcccatgaaactcaagctccggcttcatgtcggcatctatgatttctatcat |
1163896 |
T |
|
| Q |
210 |
ttttgcatgacctctcttgacagcacgtttgaaaatggcgtcacacagctttgcatcctcatcagattcagagtcctcatactccaccggcagcttcttc |
309 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
1163895 |
tttggcatgacctctcttgacagcacgtttgaaaatggcgtcacacagatttacatcctcatcagattcagggtcctcatactccaccggcagcttcttc |
1163796 |
T |
|
| Q |
310 |
gtcctcctctgccttcctgtctaattcattctttgcctccttgtcttccattttccactccttgtctaattctacatttgcatcattttcta |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1163795 |
gtcctcctctgccttcctgtctaattcattctttgcctccttgtcttccattttccactccttgtctaattccacatttgcatcattttcta |
1163704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 128 - 308
Target Start/End: Complemental strand, 2376186 - 2376006
Alignment:
| Q |
128 |
gatgcttaagttcttcttccctaatctcattcccatgaaactcaagctccggcttcatgtcggcatctatgatttctatcatttttgcatgacctctctt |
227 |
Q |
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| T |
2376186 |
gatgcttacgttcttcttccctaatctcattcacatgaaactcaagctccagcttcatgtcggcctctatgattttcatcgctttggcacgacctctatt |
2376087 |
T |
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| Q |
228 |
gacagcacgtttgaaaatggcgtcacacagctttgcatcctcatcagattcagagtcctcatactccaccggcagcttctt |
308 |
Q |
| |
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|||||||||||||||| |||||||||||| |||| |||||||||| |||||||| |||||||||||| || |||||||||| |
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| T |
2376086 |
gacagcacgtttgaaactggcgtcacacaactttacatcctcatcggattcagactcctcatactccgccagcagcttctt |
2376006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 128 - 308
Target Start/End: Original strand, 2379885 - 2380065
Alignment:
| Q |
128 |
gatgcttaagttcttcttccctaatctcattcccatgaaactcaagctccggcttcatgtcggcatctatgatttctatcatttttgcatgacctctctt |
227 |
Q |
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|||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||| ||| ||| ||| ||||||| || |
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| T |
2379885 |
gatgcttacgttcttcttccctaatctcattcacatgaaactcaagctccagcttcatgtcggcctctatgattttcatcgctttggcacgacctctatt |
2379984 |
T |
|
| Q |
228 |
gacagcacgtttgaaaatggcgtcacacagctttgcatcctcatcagattcagagtcctcatactccaccggcagcttctt |
308 |
Q |
| |
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|||||||||||||||| |||||||||||| |||| |||||||||| |||||||| |||||||||||| || |||||||||| |
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| T |
2379985 |
gacagcacgtttgaaactggcgtcacacaactttacatcctcatcggattcagactcctcatactccgccagcagcttctt |
2380065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 118 - 281
Target Start/End: Original strand, 1524612 - 1524776
Alignment:
| Q |
118 |
atcaagcagcgatgcttaagttcttcttccctaatctcattcccatgaaactcaagctccggcttcatgtcgg-catctatgatttctatcatttttgca |
216 |
Q |
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||||||| |||||||||| ||||| ||| |||||||||||||||||||||||||||||| |||||||||||| | |||||||||| || ||| ||| |
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| T |
1524612 |
atcaagcggcgatgcttacattctttttctctaatctcattcccatgaaactcaagctccagcttcatgtcggccctctatgattttcgtcgctttggca |
1524711 |
T |
|
| Q |
217 |
tgacctctcttgacagcacgtttgaaaatggcgtcacacagctttgcatcctcatcagattcaga |
281 |
Q |
| |
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||| |||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||| |
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| T |
1524712 |
ggacatctcttgacagcacgtttgaaactggtgtcacacagctttacatcctcatcagattcaga |
1524776 |
T |
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