View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5557_low_10 (Length: 410)
Name: NF5557_low_10
Description: NF5557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5557_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 15 - 393
Target Start/End: Complemental strand, 7624727 - 7624348
Alignment:
| Q |
15 |
aatactagtgcatcacattcaacaatctgaaaaacttttttccatatttgattctatctaaaggtagaagttggagcttttggctctacaattgactttt |
114 |
Q |
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| T |
7624727 |
aatactagtgcaacacattcaacaatctgacaaacttttttccatatttaattctaactaaaggtagaagttggagcttttggctctacaattgactttt |
7624628 |
T |
|
| Q |
115 |
ggccttaaaattattgttcaatttacttttacttgaactaatgtgtttaaatataaatatctctacattcacccacttgaggtggtctactactgctggc |
214 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| || |||| |
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| T |
7624627 |
ggccttgaaattattgttcaatttacttttacttgaactaatgtgtttaaatataaatatctctacattcatccacttgagttggtctactgctattggc |
7624528 |
T |
|
| Q |
215 |
ttgagaccttatagcatgattctctcaaggtttcgacttcgattctccctgatatcaattttcgtaaagaaatttgacctctt-nnnnnnnttgaattca |
313 |
Q |
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| T |
7624527 |
ttgagaccttataatatgattttctcaaggtttcaacttaaattctccttgatatcaattttcgtaaagaaatttggcctcttagaaaaaattgaattca |
7624428 |
T |
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| Q |
314 |
ttaaaaatcaaattttatcaacataaaatcaaacacacatttagtatatcatgaaacaaattcttaatcacgaatcttct |
393 |
Q |
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| T |
7624427 |
ttaaaaatcaatttttatcaacataaaatcaaacacacatttagtatatcatgaaacaaattcttaatcacgaatcttct |
7624348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 35775220 - 35775287
Alignment:
| Q |
85 |
ttggagcttttggctctacaattgacttttggccttaaaattattgttcaatttacttttacttgaac |
152 |
Q |
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| T |
35775220 |
ttggagcttttgtctctacaattgatttttagccttgaattcattgttcaatccacttttacatgaac |
35775287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 88 - 151
Target Start/End: Original strand, 30958062 - 30958125
Alignment:
| Q |
88 |
gagcttttggctctacaattgacttttggccttaaaattattgttcaatttacttttacttgaa |
151 |
Q |
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| T |
30958062 |
gagcttttgtttctacaagtgacttttaacctttaaattattgttcaattcacttttacatgaa |
30958125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 88 - 151
Target Start/End: Original strand, 30973874 - 30973937
Alignment:
| Q |
88 |
gagcttttggctctacaattgacttttggccttaaaattattgttcaatttacttttacttgaa |
151 |
Q |
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| T |
30973874 |
gagcttttgtttctacaagtgacttttaacctttaaattattgttcaattcacttttacatgaa |
30973937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 120
Target Start/End: Original strand, 51093258 - 51093316
Alignment:
| Q |
62 |
ttgattctatctaaaggtagaagttggagcttttggctctacaattgacttttggcctt |
120 |
Q |
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| T |
51093258 |
ttgattctaactgaagctagaatttggagcttttgcctctacaattgatttttagcctt |
51093316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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