View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5557_low_11 (Length: 401)
Name: NF5557_low_11
Description: NF5557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5557_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 174 - 392
Target Start/End: Complemental strand, 45762850 - 45762632
Alignment:
| Q |
174 |
aagcgcataaaccctaaatcttgggaggtctcaataaactatgagatgattttagatttatgtaaaaatttatatcgatgatatatacttatagtacaag |
273 |
Q |
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| T |
45762850 |
aagcgcataaaccctaaatcttgggaggtctcaataaactatgagatgattttagatttatgtaaaaatttatatcgatgatatatacttatagtccaag |
45762751 |
T |
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| Q |
274 |
gacaaatttggaaaatatgaattggctaaaacaatattgaacaatgtaacatttgtgtaatattgcatcagtgtagtttgattactcctcataacacaat |
373 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45762750 |
gacaaatttggaaaatatgaattggctaaaacaatattgaacgatgtaacatttgtgtaatattgcatcagtgtagtttgattactcctcataacacaat |
45762651 |
T |
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| Q |
374 |
tataaaggttcagaataat |
392 |
Q |
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||||||||||||| ||||| |
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| T |
45762650 |
tataaaggttcaggataat |
45762632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 45763053 - 45762892
Alignment:
| Q |
1 |
caaaaacataataggctattagttaattaaacggttacatgcaaagaaatgaaagtttcccct-cacacaaatttaataactaacacaaattgcaataga |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||| |
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| T |
45763053 |
caaaaacataataggctattagttaattaaacggttacatgcaaagaaatgaaagtttccccttcacacaaattcaataaataacacaaattgcaataga |
45762954 |
T |
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| Q |
100 |
aatgctgaaatcaaaccatgtcattcaattcaatctaaaataaactcagaccaacaaatcaa |
161 |
Q |
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| T |
45762953 |
aatgctgaaatcaaagcatgtcattcaattcaatctaaaataaactcagaccaacaaatcaa |
45762892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 248
Target Start/End: Original strand, 29889984 - 29890059
Alignment:
| Q |
172 |
aaaagcgcataaaccctaaatcttgggaggtctcaataaactatgagatgattttagatttatgtaaaaatttatat |
248 |
Q |
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||||| ||||||||| | |||||||| |||||||||||| ||| | ||| ||||||||||| |||||||||||||| |
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| T |
29889984 |
aaaagtgcataaacctttaatcttggtaggtctcaataacatat-aaatggttttagatttacgtaaaaatttatat |
29890059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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