View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5557_low_13 (Length: 352)
Name: NF5557_low_13
Description: NF5557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5557_low_13 |
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| [»] scaffold0267 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 342
Target Start/End: Original strand, 29126610 - 29126934
Alignment:
| Q |
18 |
agatattagccaacaaacaatcttctttaggtagagttctcaaccacaatgtttggtatgtcggtgaacatatgcatagcttgatttttcctcatctcat |
117 |
Q |
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| T |
29126610 |
agatgttaaccaacaaacaatcttctttagatagagttctcaaccacaatgtttggtatgtcggtgaacatatgcatagcttgattttgcctcatctcat |
29126709 |
T |
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| Q |
118 |
tcccattaaacttctatgcaacaacaatttgannnnnnnaatatacattaagttgtgcaagtggtgtgataactattgaatattccttaattgtgttttc |
217 |
Q |
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| T |
29126710 |
tcccattaaacttctatgcaacaacaatttgatttttttaatatacattaagttgtgcaagtggtgtgataactattgaatattccttaattgtgttttc |
29126809 |
T |
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| Q |
218 |
cttaaatagtttgattattttgttagatgatttcattgtatttattgtctgttcttaaattaaattatgtggattggattaagacattattatgagttaa |
317 |
Q |
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| T |
29126810 |
cttaaatagtttgattattttgttagatgatttcattgtatttattgtctattcttagattaaattgtgtggattggattaagacattattatgagttaa |
29126909 |
T |
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| Q |
318 |
ctttatatttatccacttgcctttg |
342 |
Q |
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| T |
29126910 |
ctttatatttatccacttgcctttg |
29126934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 204 - 337
Target Start/End: Original strand, 13760 - 13894
Alignment:
| Q |
204 |
ttaattgtgttttccttaaatagtttgattattttgttagatgatttcattgtatttattgtctgttcttaaattaaattatgtggattggattaag-ac |
302 |
Q |
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| T |
13760 |
ttaattatgttttccttagatagtttgactattttgttggatgatttcattgtacttgttgctagttgttggatcaaattatgtggattggatgatgtta |
13859 |
T |
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| Q |
303 |
attattatgagttaactttatatttatccacttgc |
337 |
Q |
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| T |
13860 |
attattatgagttaagtttatatttctccacttgc |
13894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 204 - 337
Target Start/End: Original strand, 3838279 - 3838413
Alignment:
| Q |
204 |
ttaattgtgttttccttaaatagtttgattattttgttagatgatttcattgtatttattgtctgttcttaaattaaattatgtggattggattaag-ac |
302 |
Q |
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| T |
3838279 |
ttaattatgttttccttagatagtttgactattttgctggatgatttcattgtacttattgctagttgttggatcaaattatgtggattggatgatgtta |
3838378 |
T |
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| Q |
303 |
attattatgagttaactttatatttatccacttgc |
337 |
Q |
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| T |
3838379 |
attattatgagttaagtttatatttctccacttgc |
3838413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 264
Target Start/End: Complemental strand, 33637375 - 33637283
Alignment:
| Q |
172 |
gtgcaagtggtgtgataactattgaatattccttaattgtgttttccttaaatagtttgattattttgttagatgatttcattgtatttattg |
264 |
Q |
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| T |
33637375 |
gtgcaagtagtgtgatgactattaatggttccttaattgtgttttcaatagatagtttaactattttgttggatgattcctttgtacttattg |
33637283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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