View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5557_low_15 (Length: 340)
Name: NF5557_low_15
Description: NF5557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5557_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 24 - 327
Target Start/End: Complemental strand, 4671314 - 4671011
Alignment:
| Q |
24 |
ttaagggcaatgaggaacattatgaacattgtggagtcatgttgataacttgttacccaaacaaaatgggccttaaacattaggtcgaagtgttagggtt |
123 |
Q |
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| T |
4671314 |
ttaagggcaatgaggaacattatgaacattgtggagtcatgttgataacttgttacccaaacaaaatgggccttaaacattaggtcgaagtgttagggtt |
4671215 |
T |
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| Q |
124 |
atgagagaagttttttgtgaaaaaattatcattttagcataacaatctcaatgagtagtttttgattaaattattaatgacaagtctcataagttaaaca |
223 |
Q |
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| T |
4671214 |
atgagagaagttttttgtgaaaaaattatcattttagcatgacaatctcaatgagtagtttttgattaaattattaatgacaagtctcataagttaaaca |
4671115 |
T |
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| Q |
224 |
cctgaaaagaattttagtaacacttttggagcatgcattaactttgatcatcaagctcacaataaaccagcatctctacaatgtccatgtgaacacgaac |
323 |
Q |
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||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
4671114 |
cctgaaaggaattctagtaacacttttggagcatgcattaactttgatcatcaagctcacaataaatcagcatctctacaatgtcaatgtgaacacgaac |
4671015 |
T |
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| Q |
324 |
agaa |
327 |
Q |
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|||| |
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| T |
4671014 |
agaa |
4671011 |
T |
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