View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5557_low_22 (Length: 264)
Name: NF5557_low_22
Description: NF5557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5557_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 45763052 - 45763296
Alignment:
| Q |
1 |
tgaagaaaatatcttgatttgaaatgtttggtggatttttaagattaatcaagatgggagctcttagatgggttaatgttgtgcaccagcatcaggaatg |
100 |
Q |
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| T |
45763052 |
tgaagaaaatatattgatttgaaatgtttggtggatttttaagattaatcaagatgggagctcttagatgggttaatgttgtgcaccagcatcaggaatg |
45763151 |
T |
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| Q |
101 |
gagacttttcacttgcatttggttacatgctggaattattcacttgctatcaaacatgttatgcctggtcttgatcggcattcgcctcgagcaacaattc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45763152 |
gagacttttcacttgcatttggttacatgctggaattattcacttgctatcaaacatgttatgcctggtcttgatcggcattcgcctcgagcaacaattc |
45763251 |
T |
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| Q |
201 |
gggtttggtaagctgtttccctctgctgcaattgatatctccattc |
246 |
Q |
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| T |
45763252 |
gggtttggtaagctgtttccctctgctgcaa-tgatatctccattc |
45763296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 210
Target Start/End: Original strand, 39281238 - 39281350
Alignment:
| Q |
98 |
atggagacttttcacttgcatttggttacatgctggaattattcacttgctatcaaacatgttatgcctggtcttgatcggcattcgcctcgagcaacaa |
197 |
Q |
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|||||||||| || | ||||||||||||||||||||||| ||||| ||| | |||||||| | | |||||||| || || ||||||||||| |||||| |
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| T |
39281238 |
atggagacttgtctcatgcatttggttacatgctggaatcattcatttggcagcaaacatgatcagtctggtcttcattggaattcgcctcgaacaacaa |
39281337 |
T |
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| Q |
198 |
ttcgggtttggta |
210 |
Q |
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| T |
39281338 |
tttgggttcggta |
39281350 |
T |
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