View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5557_low_24 (Length: 255)
Name: NF5557_low_24
Description: NF5557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5557_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 13960150 - 13959903
Alignment:
| Q |
1 |
catgtcgcgttatgattttggcagcataaagaatcattatgtcgcaatccaggttaacatcgcccacatttatttaaaattctatgaaaaaccaccttaa |
100 |
Q |
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| T |
13960150 |
catgtcgcgttatgattttggcagcataaagaatcattatgtcgcaatccagattaacatcgcccacatttatttaaaattctacgaaaaaccaccttaa |
13960051 |
T |
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| Q |
101 |
tattgacgttgactattgaaagtaaaagtt--tagtttttcttgtaacgtctaagactacgacttgatcggtgtaagtttgacataaacnnnnnnnctga |
198 |
Q |
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| T |
13960050 |
tattgacgttgactattgaaagtaaaagtttatagtttttcttgtaacgtctaagactatgacttgatcggtgtaagtttgacataaacaaaaaaactga |
13959951 |
T |
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| Q |
199 |
tatttgtggctcaaaatcgatcaactcaattgtttatcctatattctt |
246 |
Q |
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| T |
13959950 |
tatttgtggctcaaaatcgatcaactcaattgtttatcctatattctt |
13959903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 8 - 187
Target Start/End: Complemental strand, 13971602 - 13971421
Alignment:
| Q |
8 |
cgttatgattttggcagcataaagaatcattatgtcgcaatccaggttaacatcgcccacatttatttaaaattctatgaaaaaccaccttaatattgac |
107 |
Q |
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||||||||||||| || ||||||||||||||||||||||||| | | | ||||||| |||||||||||||||||||| | || |||||||||||||| |
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| T |
13971602 |
cgttatgattttgacaacataaagaatcattatgtcgcaatcttgataattgtcgcccaaatttatttaaaattctatgacagacaaccttaatattgac |
13971503 |
T |
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| Q |
108 |
gttgactattgaaagtaaaagtt--tagtttttcttgtaacgtctaagactacgacttgatcggtgtaagtttgacataaac |
187 |
Q |
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| T |
13971502 |
attgactattgaaagtaaaagtttatagtttttcttgtaacgtctaagattatgacttgattggtgtaagtttgacataaac |
13971421 |
T |
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