View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5557_low_26 (Length: 251)
Name: NF5557_low_26
Description: NF5557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5557_low_26 |
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| [»] chr7 (2 HSPs) |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 48479196 - 48479427
Alignment:
| Q |
19 |
ctaaattcacacaccattgcctctaactttctatcattcttcataccatgtttctaaataccattaccacacataatcatcttcaaattacacatacaac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
48479196 |
ctaaattcacacaccattgcctctaactttctatcattcttcataccatgtttctaaataccattaccacacataatcatgttcaaattacacatacaac |
48479295 |
T |
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| Q |
119 |
atacaccaaagtttgaattaaataaattttccatgaaaaggggattatacacatggtgtgtgtatggtacggttcataagggaaagagagagaaaatgga |
218 |
Q |
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|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
48479296 |
atacaccaaagtttgaattaaacaaa-tttccatgaaaaggggattatacacatggtgtgtgtatggtgcggttcataagggaaagagagagaaaatgga |
48479394 |
T |
|
| Q |
219 |
tttttgtcacttaccttgtaatcataccactct |
251 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
48479395 |
tttttgtcacttaccttgtaatcataccactct |
48479427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 42784729 - 42784498
Alignment:
| Q |
19 |
ctaaattcacacaccattgcctctaactttctatcattcttcataccatgtttctaaataccattaccacacataatcatcttcaaattacacatacaac |
118 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
42784729 |
ctaaattcacacaccattgcttctaactttctatcattcttcataccatgtttctaaataccattaccacacataatcattttcaaattacatatacaac |
42784630 |
T |
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| Q |
119 |
atacaccaaagtttgaattaaataaattttccatgaaaaggggattatacacatggtgtgtgtatggtacggttcataagggaaagagagagaaaatgga |
218 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42784629 |
atacaccaaagtttgaattaaataaa-tttccatgaaaaggggtttatacacatggtgtgtgtatggtgcggttcataagggaaagagagagaaaatgga |
42784531 |
T |
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| Q |
219 |
tttttgtcacttaccttgtaatcataccactct |
251 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
42784530 |
tttttgtcacttaccttgtaatcataccactct |
42784498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 5600837 - 5601068
Alignment:
| Q |
19 |
ctaaattcacacaccattgcctctaactttctatcattcttcataccatgtttctaaataccattaccacacataatcatcttcaaattacacatacaac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5600837 |
ctaaattcacacaccattgcctctaactttctatcattcttcataccatgtttctaaataccattaccacacataatcatgttcaaattacacatacaac |
5600936 |
T |
|
| Q |
119 |
atacaccaaagtttgaattaaataaattttccatgaaaaggggattatacacatggtgtgtgtatggtacggttcataagggaaagagagagaaaatgga |
218 |
Q |
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|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5600937 |
atacaccaaagtttgaattaaacaaa-tttccatgaaaaggggattatacacatggtgtgtgtatggtgcggttcataagggaaagagagagaaaatgga |
5601035 |
T |
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| Q |
219 |
tttttgtcacttaccttgtaatcataccactct |
251 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
5601036 |
tttttgtcacttaccttgtaatcataccactct |
5601068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 51 - 168
Target Start/End: Original strand, 4853853 - 4853968
Alignment:
| Q |
51 |
atcattcttcataccatgtttctaaataccattaccacacataatcatcttcaaattacacatacaacatacaccaaagtttgaattaaataaattttcc |
150 |
Q |
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|||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||| ||||||||| ||||| || | |||||||| ||||| |
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| T |
4853853 |
atcattcttcataccatgtttctaaatacctttattacacataatcatcttc-aattacacattcaacatacaacaaagcttacactaaataaa-tttcc |
4853950 |
T |
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| Q |
151 |
atgaaaaggggattatac |
168 |
Q |
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||||||||| ||| |||| |
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| T |
4853951 |
atgaaaaggtgatcatac |
4853968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 51 - 168
Target Start/End: Original strand, 28023385 - 28023500
Alignment:
| Q |
51 |
atcattcttcataccatgtttctaaataccattaccacacataatcatcttcaaattacacatacaacatacaccaaagtttgaattaaataaattttcc |
150 |
Q |
| |
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||||||||||| |||||||||||||||||| |||| |||||||||||||||| |||||||||| ||||||||| ||||| || | |||||||| ||||| |
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| T |
28023385 |
atcattcttcacaccatgtttctaaatacctttactacacataatcatcttc-aattacacattcaacatacaacaaagcttacactaaataaa-tttcc |
28023482 |
T |
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| Q |
151 |
atgaaaaggggattatac |
168 |
Q |
| |
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||||||||| ||| |||| |
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| T |
28023483 |
atgaaaaggtgatcatac |
28023500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 55 - 157
Target Start/End: Original strand, 6736900 - 6737000
Alignment:
| Q |
55 |
ttcttcataccatgtttctaaataccattaccacacataatcatcttcaaattacacatacaacatacaccaaagtttgaattaaataaattttccatga |
154 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||| |||||||| ||||| || | |||||||| ||||||||| |
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| T |
6736900 |
ttcttcataccatgtttctaaatacctttactacacataatcatcttc-aattacacattcaacatacgacaaagcttacactaaataaa-tttccatga |
6736997 |
T |
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| Q |
155 |
aaa |
157 |
Q |
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||| |
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| T |
6736998 |
aaa |
6737000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 51 - 168
Target Start/End: Complemental strand, 29933516 - 29933401
Alignment:
| Q |
51 |
atcattcttcataccatgtttctaaataccattaccacacataatcatcttcaaattacacatacaacatacaccaaagtttgaattaaataaattttcc |
150 |
Q |
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|
||||||||||| |||||||||||||||||| |||| |||||||||||||||| |||||||||| ||||||||| ||||| || | |||||||| ||||| |
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| T |
29933516 |
atcattcttcacaccatgtttctaaatacctttactacacataatcatcttc-aattacacattcaacatacaacaaagcttacactaaataaa-tttcc |
29933419 |
T |
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| Q |
151 |
atgaaaaggggattatac |
168 |
Q |
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||||||||| ||| |||| |
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| T |
29933418 |
atgaaaaggtgatcatac |
29933401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 51 - 168
Target Start/End: Complemental strand, 2742289 - 2742174
Alignment:
| Q |
51 |
atcattcttcataccatgtttctaaataccattaccacacataatcatcttcaaattacacatacaacatacaccaaagtttgaattaaataaattttcc |
150 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||| |||||||||||||||| |||||||||| ||||||||| ||||| || | |||||||| ||||| |
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| T |
2742289 |
atcattcttcacaccatgtttctaaatacctttactacacataatcatcttc-aattacacattcaacatacaacaaagcttacactaaataaa-tttcc |
2742192 |
T |
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| Q |
151 |
atgaaaaggggattatac |
168 |
Q |
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||||||||| ||| |||| |
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| T |
2742191 |
atgaaaaggtgatcatac |
2742174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 104
Target Start/End: Complemental strand, 14113573 - 14113520
Alignment:
| Q |
51 |
atcattcttcataccatgtttctaaataccattaccacacataatcatcttcaa |
104 |
Q |
| |
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||||||||||||| |||||||||||||||| |||| |||| ||||||||||||| |
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| T |
14113573 |
atcattcttcataacatgtttctaaatacctttactacacgtaatcatcttcaa |
14113520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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