View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5557_low_27 (Length: 250)

Name: NF5557_low_27
Description: NF5557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5557_low_27
NF5557_low_27
[»] chr5 (13 HSPs)
chr5 (118-207)||(30293380-30293468)
chr5 (146-207)||(17555962-17556023)
chr5 (137-197)||(25467134-25467194)
chr5 (116-199)||(39030565-39030647)
chr5 (151-207)||(9530949-9531005)
chr5 (164-199)||(12619668-12619703)
chr5 (115-194)||(15119298-15119376)
chr5 (137-196)||(19644427-19644486)
chr5 (120-199)||(38958067-38958145)
chr5 (144-197)||(2424466-2424519)
chr5 (146-199)||(9956524-9956577)
chr5 (145-194)||(17858198-17858247)
chr5 (120-197)||(34252723-34252799)
[»] chr2 (22 HSPs)
chr2 (119-207)||(7932748-7932835)
chr2 (120-199)||(944777-944855)
chr2 (141-207)||(38935381-38935447)
chr2 (120-199)||(10459272-10459350)
chr2 (120-199)||(16180461-16180539)
chr2 (118-207)||(2884260-2884348)
chr2 (120-199)||(19924310-19924388)
chr2 (148-207)||(24037602-24037661)
chr2 (137-199)||(11386331-11386393)
chr2 (146-199)||(43398864-43398917)
chr2 (120-192)||(31469077-31469148)
chr2 (139-207)||(43042190-43042258)
chr2 (146-189)||(43465485-43465528)
chr2 (141-171)||(32614163-32614193)
chr2 (146-199)||(2949073-2949126)
chr2 (136-197)||(33615272-33615333)
chr2 (154-199)||(40823555-40823600)
chr2 (116-173)||(41912129-41912186)
chr2 (120-189)||(44726818-44726886)
chr2 (155-207)||(1862673-1862725)
chr2 (163-207)||(16564424-16564468)
chr2 (147-207)||(41374547-41374607)
[»] chr8 (8 HSPs)
chr8 (137-199)||(33557801-33557863)
chr8 (137-199)||(13209986-13210048)
chr8 (119-197)||(8777774-8777851)
chr8 (137-199)||(11114258-11114320)
chr8 (120-199)||(7974812-7974890)
chr8 (141-199)||(12788241-12788299)
chr8 (118-207)||(35901053-35901141)
chr8 (119-207)||(9548067-9548154)
[»] chr1 (8 HSPs)
chr1 (119-207)||(37918932-37919019)
chr1 (118-213)||(29855070-29855164)
chr1 (120-205)||(5056314-5056398)
chr1 (118-186)||(24023963-24024030)
chr1 (118-192)||(3739847-3739920)
chr1 (137-207)||(30693357-30693427)
chr1 (153-199)||(31784773-31784819)
chr1 (141-206)||(3694006-3694071)
[»] scaffold0034 (1 HSPs)
scaffold0034 (137-199)||(94968-95030)
[»] chr6 (9 HSPs)
chr6 (120-199)||(31323820-31323898)
chr6 (120-193)||(14446702-14446774)
chr6 (118-199)||(1986208-1986288)
chr6 (137-194)||(33822310-33822367)
chr6 (141-197)||(2282424-2282480)
chr6 (155-199)||(14222833-14222877)
chr6 (148-207)||(30531211-30531270)
chr6 (141-199)||(9829917-9829975)
chr6 (118-207)||(35003763-35003851)
[»] chr7 (10 HSPs)
chr7 (141-199)||(18732016-18732074)
chr7 (146-207)||(14773502-14773563)
chr7 (146-207)||(15223954-15224015)
chr7 (122-208)||(4259323-4259408)
chr7 (126-173)||(34515857-34515903)
chr7 (146-207)||(3769771-3769832)
chr7 (120-199)||(6803313-6803391)
chr7 (120-199)||(16866407-16866485)
chr7 (116-199)||(23971211-23971292)
chr7 (139-199)||(29369880-29369940)
[»] chr4 (8 HSPs)
chr4 (137-207)||(5024670-5024740)
chr4 (116-199)||(30848616-30848700)
chr4 (120-199)||(24980651-24980729)
chr4 (146-199)||(12276851-12276904)
chr4 (123-199)||(51531507-51531583)
chr4 (115-207)||(54235240-54235331)
chr4 (137-199)||(4423171-4423233)
chr4 (151-207)||(5496869-5496925)
[»] scaffold0009 (1 HSPs)
scaffold0009 (146-199)||(51247-51300)
[»] chr3 (8 HSPs)
chr3 (141-207)||(47783104-47783170)
chr3 (150-197)||(18364203-18364250)
chr3 (120-195)||(32221500-32221574)
chr3 (120-198)||(26914476-26914553)
chr3 (117-199)||(31280158-31280239)
chr3 (151-197)||(45610470-45610516)
chr3 (137-194)||(40955800-40955857)
chr3 (131-192)||(41343877-41343938)
[»] scaffold0097 (1 HSPs)
scaffold0097 (141-199)||(37937-37995)
[»] scaffold0067 (1 HSPs)
scaffold0067 (137-207)||(35962-36032)


Alignment Details
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 118 - 207
Target Start/End: Original strand, 30293380 - 30293468
Alignment:
Q  118 ctaaaatataagcaaaagtttgatcaataaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgttgaatcatttt 207  Q
    |||||||||||| |||| ||||||||| |||||| |||||||||  ||||||||||| ||||||||||||||| |||||||| |||||||    
T  30293380 ctaaaatataagtaaaa-tttgatcaacaaaagtcaatgtatttgattcaaaatttatatcaaatacatcaacatatgttgactcatttt 30293468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 207
Target Start/End: Complemental strand, 17556023 - 17555962
Alignment:
Q  146 aaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgttgaatcatttt 207  Q
    |||||||||||||| | |||||||||||| |||||||| ||||||||| ||||| |||||||    
T  17556023 aaaagttaatgtatgtggttcaaaatttatatcaaatatatcaacttacgttgactcatttt 17555962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 137 - 197
Target Start/End: Complemental strand, 25467194 - 25467134
Alignment:
Q  137 ttgatcaataaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgtt 197  Q
    |||||| |||||||||||||||| | |||||||||||| |||  |||||||||||||||||    
T  25467194 ttgatcgataaaagttaatgtatgtggttcaaaatttatatcggatacatcaacttatgtt 25467134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 199
Target Start/End: Original strand, 39030565 - 39030647
Alignment:
Q  116 ttctaaaatataagcaaaagtttgatcaataaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgttga 199  Q
    ||||||||||||||||||| || | |||| |||||||||||||||| ||| |||||||  | ||||||||| ||||| ||||||    
T  39030565 ttctaaaatataagcaaaaattgg-tcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaacttttgttga 39030647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 207
Target Start/End: Original strand, 9530949 - 9531005
Alignment:
Q  151 ttaatgtattttgttcaaaatttacatcaaatacatcaacttatgttgaatcatttt 207  Q
    ||||||||||| |||||||||||| |||||||||| ||| |||| |||| |||||||    
T  9530949 ttaatgtatttggttcaaaatttatatcaaatacaccaatttatattgactcatttt 9531005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 199
Target Start/End: Original strand, 12619668 - 12619703
Alignment:
Q  164 ttcaaaatttacatcaaatacatcaacttatgttga 199  Q
    ||||||||||| ||||||||||||||||||||||||    
T  12619668 ttcaaaatttatatcaaatacatcaacttatgttga 12619703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 194
Target Start/End: Original strand, 15119298 - 15119376
Alignment:
Q  115 attctaaaatataagcaaaagtttgatcaataaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttat 194  Q
    |||||||||||||||||||| || | ||||||||| |||||||||||  ||||||||||  || ||||| || |||||||    
T  15119298 attctaaaatataagcaaaaattag-tcaataaaacttaatgtatttgattcaaaatttgtattaaatatattaacttat 15119376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 196
Target Start/End: Complemental strand, 19644486 - 19644427
Alignment:
Q  137 ttgatcaataaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgt 196  Q
    |||||||| |||| |||| |||||| |||||||||||| |  ||||||||||||||||||    
T  19644486 ttgatcaacaaaaattaacgtatttggttcaaaatttatactaaatacatcaacttatgt 19644427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 199
Target Start/End: Original strand, 38958067 - 38958145
Alignment:
Q  120 aaaatataagcaaaagtttgatcaataaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgttga 199  Q
    |||||||||| |||| || ||| || |||||||||||||||| ||||||| |||  | |||||||||||||| |||||||    
T  38958067 aaaatataagtaaaaatt-gattaacaaaagttaatgtatttggttcaaattttgtaccaaatacatcaactcatgttga 38958145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 2424519 - 2424466
Alignment:
Q  144 ataaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgtt 197  Q
    |||||||||||||||||| |||||||||||  | || |||||||| ||||||||    
T  2424519 ataaaagttaatgtatttggttcaaaatttgtaccatatacatcagcttatgtt 2424466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 199
Target Start/End: Complemental strand, 9956577 - 9956524
Alignment:
Q  146 aaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgttga 199  Q
    ||||||||||||||||  ||||||||||| | || |||||||||| ||||||||    
T  9956577 aaaagttaatgtatttgattcaaaatttataacagatacatcaacatatgttga 9956524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 194
Target Start/End: Original strand, 17858198 - 17858247
Alignment:
Q  145 taaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttat 194  Q
    ||||| ||||||||||| |||||||||||  |||| ||||||||||||||    
T  17858198 taaaaattaatgtatttggttcaaaatttgtatcagatacatcaacttat 17858247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 197
Target Start/End: Original strand, 34252723 - 34252799
Alignment:
Q  120 aaaatataagcaaaagtttgatcaataaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgtt 197  Q
    ||||| ||||||||| || | |||| |||||||||||||||| ||||||||||||   || || ||||||||||||||    
T  34252723 aaaatgtaagcaaaaattgg-tcaacaaaagttaatgtatttggttcaaaatttatgccacattcatcaacttatgtt 34252799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 119 - 207
Target Start/End: Original strand, 7932748 - 7932835
Alignment:
Q  119 taaaatataagcaaaagtttgatcaataaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgttgaatcatttt 207  Q
    |||||||||||||||| || | |||| ||||||||| |||||| |||||||||||| |||| ||||||||||||||||||| |||||||    
T  7932748 taaaatataagcaaaaattag-tcaacaaaagttaacgtatttggttcaaaatttatatcagatacatcaacttatgttgactcatttt 7932835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 120 - 199
Target Start/End: Original strand, 944777 - 944855
Alignment:
Q  120 aaaatataagcaaaagtttgatcaataaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgttga 199  Q
    ||||||||||||||| |  ||||||||||||||||||||||| |||||||||||  | ||||||||||||||||||||||    
T  944777 aaaatataagcaaaaatc-gatcaataaaagttaatgtatttagttcaaaatttgtaccaaatacatcaacttatgttga 944855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 141 - 207
Target Start/End: Complemental strand, 38935447 - 38935381
Alignment:
Q  141 tcaataaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgttgaatcatttt 207  Q
    |||| |||||||||||||||||||||||||| |  |||||||||||||||||||||||| |||||||    
T  38935447 tcaacaaaagttaatgtattttgttcaaaatctgtatcaaatacatcaacttatgttgactcatttt 38935381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 120 - 199
Target Start/End: Original strand, 10459272 - 10459350
Alignment:
Q  120 aaaatataagcaaaagtttgatcaataaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgttga 199  Q
    ||||||||||||||| || | |||| |||||||||||||||| |||||||||||  |||| || ||||||||||||||||    
T  10459272 aaaatataagcaaaaattgg-tcaacaaaagttaatgtatttggttcaaaatttgtatcagatgcatcaacttatgttga 10459350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 120 - 199
Target Start/End: Complemental strand, 16180539 - 16180461
Alignment:
Q  120 aaaatataagcaaaagtttgatcaataaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgttga 199  Q
    |||||||||| |||| |||| |||| |||||||||||||||| |||||||||||| ||  |||||||||| |||||||||    
T  16180539 aaaatataagtaaaa-tttggtcaacaaaagttaatgtatttggttcaaaatttatatttaatacatcaatttatgttga 16180461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 207
Target Start/End: Original strand, 2884260 - 2884348
Alignment:
Q  118 ctaaaatataagcaaaagtttgatcaataaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgttgaatcatttt 207  Q
    |||||||||||| |||| |||| |||| |||| ||||||||||| |||||||||||| |||||||| || || |||| |||| |||||||    
T  2884260 ctaaaatataagtaaaaatttg-tcaacaaaaattaatgtatttggttcaaaatttatatcaaatatattaaattatattgactcatttt 2884348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 199
Target Start/End: Original strand, 19924310 - 19924388
Alignment:
Q  120 aaaatataagcaaaagtttgatcaataaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgttga 199  Q
    ||||| |||| ||||||| | ||||||||||||||||||| | |||||||||||  | |||||||||||||||| |||||    
T  19924310 aaaatgtaagtaaaagttag-tcaataaaagttaatgtatatggttcaaaatttgtaccaaatacatcaacttacgttga 19924388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 207
Target Start/End: Complemental strand, 24037661 - 24037602
Alignment:
Q  148 aagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgttgaatcatttt 207  Q
    ||||| ||||||||||||||||||||  | |||||| ||||||||||||||| |||||||    
T  24037661 aagttgatgtattttgttcaaaatttgtaccaaatatatcaacttatgttgactcatttt 24037602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 199
Target Start/End: Original strand, 11386331 - 11386393
Alignment:
Q  137 ttgatcaataaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgttga 199  Q
    |||||||| |||| ||||| |||||  ||||||||||  ||||||||||||||||||||||||    
T  11386331 ttgatcaacaaaaattaatatatttaattcaaaatttgtatcaaatacatcaacttatgttga 11386393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 199
Target Start/End: Complemental strand, 43398917 - 43398864
Alignment:
Q  146 aaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgttga 199  Q
    |||||||||||||||| |||||||||||  | ||||||||||||||||| ||||    
T  43398917 aaaagttaatgtatttggttcaaaatttgtaccaaatacatcaacttatattga 43398864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 192
Target Start/End: Original strand, 31469077 - 31469148
Alignment:
Q  120 aaaatataagcaaaagtttgatcaataaaagttaatgtattttgttcaaaatttacatcaaatacatcaactt 192  Q
    ||||||||||||||| || | |||| |||||||||||||||| ||| |||||||  ||||||||||| |||||    
T  31469077 aaaatataagcaaaaattgg-tcaacaaaagttaatgtatttggttaaaaatttgtatcaaatacattaactt 31469148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 207
Target Start/End: Original strand, 43042190 - 43042258
Alignment:
Q  139 gatcaataaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgttgaatcatttt 207  Q
    |||||| |||| ||||||||||  |||||||||||| |||| |||||||||||| |||| | |||||||    
T  43042190 gatcaacaaaatttaatgtattcggttcaaaatttatatcagatacatcaacttttgtttactcatttt 43042258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 189
Target Start/End: Complemental strand, 43465528 - 43465485
Alignment:
Q  146 aaaagttaatgtattttgttcaaaatttacatcaaatacatcaa 189  Q
    |||||||||||||||||||||||||||||  ||| |||||||||    
T  43465528 aaaagttaatgtattttgttcaaaatttatgtcagatacatcaa 43465485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 171
Target Start/End: Original strand, 32614163 - 32614193
Alignment:
Q  141 tcaataaaagttaatgtattttgttcaaaat 171  Q
    |||||||||||||||||||||||||||||||    
T  32614163 tcaataaaagttaatgtattttgttcaaaat 32614193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 2949073 - 2949126
Alignment:
Q  146 aaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgttga 199  Q
    ||||| ||||||||||||||||||||| |  ||| ||||||||| |||||||||    
T  2949073 aaaagctaatgtattttgttcaaaattaatgtcatatacatcaatttatgttga 2949126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 197
Target Start/End: Original strand, 33615272 - 33615333
Alignment:
Q  136 tttgatcaataaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgtt 197  Q
    |||| ||||||||  ||||| |||||  ||||||||||  ||||||||||||||||||||||    
T  33615272 tttggtcaataaatattaatatatttgattcaaaatttgtatcaaatacatcaacttatgtt 33615333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 40823600 - 40823555
Alignment:
Q  154 atgtattttgttcaaaatttacatcaaatacatcaacttatgttga 199  Q
    |||||||| ||| |||||||| |||||||||||||| |||||||||    
T  40823600 atgtatttggtttaaaatttatatcaaatacatcaaattatgttga 40823555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 173
Target Start/End: Complemental strand, 41912186 - 41912129
Alignment:
Q  116 ttctaaaatataagcaaaagtttgatcaataaaagttaatgtattttgttcaaaattt 173  Q
    |||||||||||||||||||  ||| |||| |||| ||||||||| | |||||||||||    
T  41912186 ttctaaaatataagcaaaaaattgttcaacaaaaattaatgtatctggttcaaaattt 41912129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 189
Target Start/End: Complemental strand, 44726886 - 44726818
Alignment:
Q  120 aaaatataagcaaaagtttgatcaataaaagttaatgtattttgttcaaaatttacatcaaatacatcaa 189  Q
    |||||||||| |||| || |||||| |||| ||||||||||| ||| |||||||| |||||||| |||||    
T  44726886 aaaatataagaaaaaatt-gatcaacaaaaattaatgtatttagtttaaaatttatatcaaatatatcaa 44726818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 1862725 - 1862673
Alignment:
Q  155 tgtattttgttcaaaatttacatcaaatacatcaacttatgttgaatcatttt 207  Q
    |||||||  ||||||||||   ||||||||||||||||||||||| |||||||    
T  1862725 tgtatttgattcaaaatttgtgtcaaatacatcaacttatgttgactcatttt 1862673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 16564424 - 16564468
Alignment:
Q  163 gttcaaaatttacatcaaatacatcaacttatgttgaatcatttt 207  Q
    |||||||||||  | |||||||||||||||||||||| |||||||    
T  16564424 gttcaaaatttgtaccaaatacatcaacttatgttgactcatttt 16564468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 41374607 - 41374547
Alignment:
Q  147 aaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgttgaatcatttt 207  Q
    |||||||||||||||  |||||| |||| | ||||||||||||||| |||| | |||||||    
T  41374607 aaagttaatgtatttgattcaaagtttataccaaatacatcaacttgtgttcactcatttt 41374547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 137 - 199
Target Start/End: Complemental strand, 33557863 - 33557801
Alignment:
Q  137 ttgatcaataaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgttga 199  Q
    ||||||||||||||||||||||||| |||||||||||  ||||||||||| ||||||||||||    
T  33557863 ttgatcaataaaagttaatgtatttagttcaaaatttgtatcaaatacataaacttatgttga 33557801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 137 - 199
Target Start/End: Original strand, 13209986 - 13210048
Alignment:
Q  137 ttgatcaataaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgttga 199  Q
    |||||||| |||||||||||||||| |||||||||||  |||| |||||||||||||||||||    
T  13209986 ttgatcaacaaaagttaatgtatttggttcaaaatttgtatcagatacatcaacttatgttga 13210048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 197
Target Start/End: Original strand, 8777774 - 8777851
Alignment:
Q  119 taaaatataagcaaaagtttgatcaataaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgtt 197  Q
    |||||||||| ||||| || |||||| |||||||||| ||||| |||||||||||| || |||||||| ||||||||||    
T  8777774 taaaatataaacaaaaatt-gatcaacaaaagttaatatatttggttcaaaatttatattaaatacattaacttatgtt 8777851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 199
Target Start/End: Original strand, 11114258 - 11114320
Alignment:
Q  137 ttgatcaataaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgttga 199  Q
    |||||||| |||| ||||||||||  ||| |||||||| | ||||||||||||||||||||||    
T  11114258 ttgatcaacaaaaattaatgtattcagtttaaaatttataccaaatacatcaacttatgttga 11114320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 199
Target Start/End: Complemental strand, 7974890 - 7974812
Alignment:
Q  120 aaaatataagcaaaagtttgatcaataaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgttga 199  Q
    ||||||||| ||||| || | ||||||||||||||||||||||  |||||||||  | ||||||| |||| |||||||||    
T  7974890 aaaatataaacaaaaattgg-tcaataaaagttaatgtatttttgtcaaaatttgtaccaaatacgtcaatttatgttga 7974812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 199
Target Start/End: Complemental strand, 12788299 - 12788241
Alignment:
Q  141 tcaataaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgttga 199  Q
    ||||||||| ||||| |||||||||| | ||||| | |||||||||||| |||||||||    
T  12788299 tcaataaaaattaatatattttgttctatatttataacaaatacatcaatttatgttga 12788241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 207
Target Start/End: Complemental strand, 35901141 - 35901053
Alignment:
Q  118 ctaaaatataagcaaaagtttgatcaataaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgttgaatcatttt 207  Q
    ||||||||||||||||| |  | |||| |||||||||||||||  | |||||||||  |  || |||||||||||||||||| |||||||    
T  35901141 ctaaaatataagcaaaaatagg-tcaacaaaagttaatgtattgggctcaaaatttgtactaattacatcaacttatgttgactcatttt 35901053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 207
Target Start/End: Complemental strand, 9548154 - 9548067
Alignment:
Q  119 taaaatataagcaaaagtttgatcaataaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgttgaatcatttt 207  Q
    |||||||||| ||||| || | |||| |||| ||| | ||||| |||||||||||  |  ||||||||||||||||||||| |||||||    
T  9548154 taaaatataaacaaaaatt-gttcaacaaaaattattatatttggttcaaaatttgtactaaatacatcaacttatgttgactcatttt 9548067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 119 - 207
Target Start/End: Complemental strand, 37919019 - 37918932
Alignment:
Q  119 taaaatataagcaaaagtttgatcaataaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgttgaatcatttt 207  Q
    |||| ||||||| ||| |||| |||| |||||| ||||||||| ||| |||||||| |||||||||||||||||||||||| |||||||    
T  37919019 taaactataagcgaaaatttg-tcaacaaaagtgaatgtatttggtttaaaatttatatcaaatacatcaacttatgttgattcatttt 37918932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 118 - 213
Target Start/End: Complemental strand, 29855164 - 29855070
Alignment:
Q  118 ctaaaatataagcaaaagtttgatcaataaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgttgaatcattttctctta 213  Q
    ||||||||||||||||| || |||||| |||||||||||||||| || |||| |||  | ||||||||||||||| |||||| | |||||| ||||    
T  29855164 ctaaaatataagcaaaaatt-gatcaacaaaagttaatgtatttcgtacaaatttttaaccaaatacatcaacttttgttgattaattttcgctta 29855070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 205
Target Start/End: Complemental strand, 5056398 - 5056314
Alignment:
Q  120 aaaatataagcaaaagtttgatcaataaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgttgaatcatt 205  Q
    ||||||||| ||||| || | ||||||||| |||| ||||||  ||||||||||  |||||||||||||||||||||||| |||||    
T  5056398 aaaatataaacaaaaattgg-tcaataaaaattaacgtatttgattcaaaatttgtatcaaatacatcaacttatgttgactcatt 5056314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 186
Target Start/End: Complemental strand, 24024030 - 24023963
Alignment:
Q  118 ctaaaatataagcaaaagtttgatcaataaaagttaatgtattttgttcaaaatttacatcaaatacat 186  Q
    ||||||||||| |||||  |||||||| |||||||||||||| | ||||||||||| ||||| ||||||    
T  24024030 ctaaaatataa-caaaaaattgatcaacaaaagttaatgtatgtggttcaaaatttgcatcagatacat 24023963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 192
Target Start/End: Complemental strand, 3739920 - 3739847
Alignment:
Q  118 ctaaaatataagcaaaagtttgatcaataaaagttaatgtattttgttcaaaatttacatcaaatacatcaactt 192  Q
    ||||||||||||||||| || | |||| |||||||||||||||| ||| |||||||  | ||||||||| |||||    
T  3739920 ctaaaatataagcaaaaattgg-tcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaactt 3739847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 207
Target Start/End: Original strand, 30693357 - 30693427
Alignment:
Q  137 ttgatcaataaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgttgaatcatttt 207  Q
    |||||||| |||| |||||||||||  ||||||||||  | |||||||||||  ||||||||| |||||||    
T  30693357 ttgatcaacaaaaattaatgtatttgattcaaaatttgtaccaaatacatcatattatgttgattcatttt 30693427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 199
Target Start/End: Original strand, 31784773 - 31784819
Alignment:
Q  153 aatgtattttgttcaaaatttacatcaaatacatcaacttatgttga 199  Q
    |||||||||||||||||||||  || | |||||||||||||||||||    
T  31784773 aatgtattttgttcaaaatttgtattagatacatcaacttatgttga 31784819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 206
Target Start/End: Complemental strand, 3694071 - 3694006
Alignment:
Q  141 tcaataaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgttgaatcattt 206  Q
    |||| |||| |||||||||||  ||||||||||  || ||||||||||| ||||||||| ||||||    
T  3694071 tcaacaaaaattaatgtatttgattcaaaatttgtattaaatacatcaatttatgttgactcattt 3694006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 137 - 199
Target Start/End: Original strand, 94968 - 95030
Alignment:
Q  137 ttgatcaataaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgttga 199  Q
    ||||||||||||| |||||||||| ||||||||||||  | ||||||||||||||||||||||    
T  94968 ttgatcaataaaaattaatgtattatgttcaaaatttgtaccaaatacatcaacttatgttga 95030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 120 - 199
Target Start/End: Original strand, 31323820 - 31323898
Alignment:
Q  120 aaaatataagcaaaagtttgatcaataaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgttga 199  Q
    ||||| ||||||||| || | |||| ||||||||||||||||||||||||||||  | || |||||||||||||||||||    
T  31323820 aaaatgtaagcaaaaattgg-tcaacaaaagttaatgtattttgttcaaaatttgtaccagatacatcaacttatgttga 31323898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 193
Target Start/End: Original strand, 14446702 - 14446774
Alignment:
Q  120 aaaatataagcaaaagtttgatcaataaaagttaatgtattttgttcaaaatttacatcaaatacatcaactta 193  Q
    ||||| |||||||||||| | |||| |||||||||||||| |||||||||||||| || | |||||||||||||    
T  14446702 aaaatgtaagcaaaagttgg-tcaacaaaagttaatgtatgttgttcaaaatttatattagatacatcaactta 14446774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 199
Target Start/End: Original strand, 1986208 - 1986288
Alignment:
Q  118 ctaaaatataagcaaaagtttgatcaataaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgttga 199  Q
    |||||||||||| ||||||| | ||||||||| |||||| |||| ||| |||||||| | |||||| || ||||||||||||    
T  1986208 ctaaaatataagtaaaagttgg-tcaataaaaattaatgcatttagtttaaaatttataccaaatatattaacttatgttga 1986288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 194
Target Start/End: Original strand, 33822310 - 33822367
Alignment:
Q  137 ttgatcaataaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttat 194  Q
    ||||| || |||||||||| ||||| |||||||||||  |||||||||||||||||||    
T  33822310 ttgattaacaaaagttaatatatttagttcaaaatttgtatcaaatacatcaacttat 33822367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 2282424 - 2282480
Alignment:
Q  141 tcaataaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgtt 197  Q
    |||| |||||||||||||||| |||||||| ||  |||||||||||||| |||||||    
T  2282424 tcaacaaaagttaatgtatttagttcaaaaattgtatcaaatacatcaatttatgtt 2282480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 14222833 - 14222877
Alignment:
Q  155 tgtattttgttcaaaatttacatcaaatacatcaacttatgttga 199  Q
    |||||||| ||||||||||||| || |||||||||||||||||||    
T  14222833 tgtattttattcaaaatttacaccatatacatcaacttatgttga 14222877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 207
Target Start/End: Original strand, 30531211 - 30531270
Alignment:
Q  148 aagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgttgaatcatttt 207  Q
    ||||| |||||||| ||||||| |||  | |||||||||||||||||||||| |||||||    
T  30531211 aagttgatgtatttggttcaaagtttgtaccaaatacatcaacttatgttgagtcatttt 30531270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 199
Target Start/End: Original strand, 9829917 - 9829975
Alignment:
Q  141 tcaataaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgttga 199  Q
    |||| |||| ||||||||||||||| |||||||  | |||||||||||| |||||||||    
T  9829917 tcaacaaaaattaatgtattttgtttaaaatttgtaccaaatacatcaatttatgttga 9829975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 207
Target Start/End: Original strand, 35003763 - 35003851
Alignment:
Q  118 ctaaaatataagcaaaagtttgatcaataaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgttgaatcatttt 207  Q
    |||||||||||| |||| || | | ||||||| |||||||||||  ||||||||||  |  ||||| ||||||||||||||| |||||||    
T  35003763 ctaaaatataagtaaaaattggtt-aataaaaattaatgtatttgattcaaaatttgtacaaaatatatcaacttatgttgattcatttt 35003851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 199
Target Start/End: Complemental strand, 18732074 - 18732016
Alignment:
Q  141 tcaataaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgttga 199  Q
    ||||||||||||||||||||| |||||||||||| | || ||||||||| |||||||||    
T  18732074 tcaataaaagttaatgtatttggttcaaaatttataccagatacatcaatttatgttga 18732016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 207
Target Start/End: Original strand, 14773502 - 14773563
Alignment:
Q  146 aaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgttgaatcatttt 207  Q
    |||||||||||||| | |||||||||||| |||| ||||||||||||| ||||| |||||||    
T  14773502 aaaagttaatgtatgtggttcaaaatttatatcagatacatcaacttacgttgactcatttt 14773563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 207
Target Start/End: Original strand, 15223954 - 15224015
Alignment:
Q  146 aaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgttgaatcatttt 207  Q
    |||||||||||||| | |||||||||||| |||| ||||||||||||| ||||| |||||||    
T  15223954 aaaagttaatgtatgtggttcaaaatttatatcagatacatcaacttacgttgactcatttt 15224015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 208
Target Start/End: Complemental strand, 4259408 - 4259323
Alignment:
Q  122 aatataagcaaaagtttgatc-aataaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgttgaatcattttc 208  Q
    ||||||||||||| || |||| || |||||||||||||||| |||||||||||| |  |||||||| |||||||||||| ||||||||    
T  4259408 aatataagcaaaaatt-gatctaacaaaagttaatgtattt-gttcaaaatttatagtaaatacattaacttatgttgactcattttc 4259323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 34515903 - 34515857
Alignment:
Q  126 taagcaaaagtttgatcaataaaagttaatgtattttgttcaaaattt 173  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||    
T  34515903 taagcaaaa-tttggtcaataaaagttaatgtattttgttcaaaattt 34515857  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 207
Target Start/End: Complemental strand, 3769832 - 3769771
Alignment:
Q  146 aaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgttgaatcatttt 207  Q
    |||||||||||||||| ||| |||||||  || |||||||||||||| |||||| |||||||    
T  3769832 aaaagttaatgtatttagtttaaaatttgtattaaatacatcaacttgtgttgactcatttt 3769771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 199
Target Start/End: Original strand, 6803313 - 6803391
Alignment:
Q  120 aaaatataagcaaaagtttgatcaataaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgttga 199  Q
    ||||||||||||||| |||| |||| |||||||||||||||| ||| |||||||  | |||||||  |||||| ||||||    
T  6803313 aaaatataagcaaaa-tttggtcaacaaaagttaatgtatttagtttaaaatttgtaccaaatacgccaacttgtgttga 6803391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 199
Target Start/End: Original strand, 16866407 - 16866485
Alignment:
Q  120 aaaatataagcaaaagtttgatcaataaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgttga 199  Q
    ||||||||||||||| || ||||||||||||||||||||||  || |||| |||  | ||||||||| ||||| ||||||    
T  16866407 aaaatataagcaaaaatt-gatcaataaaagttaatgtattaggtacaaatttttaaccaaatacattaacttttgttga 16866485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 199
Target Start/End: Complemental strand, 23971292 - 23971211
Alignment:
Q  116 ttctaaaatataagcaaaagtttgatcaataaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgttga 199  Q
    |||||||||||||| ||||  ||| |||| |||| | ||| ||||| |||||||||||  | ||||||||||||||||| ||||    
T  23971292 ttctaaaatataagaaaaa--ttggtcaacaaaaataaatatatttagttcaaaatttgtaccaaatacatcaacttatattga 23971211  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 199
Target Start/End: Complemental strand, 29369940 - 29369880
Alignment:
Q  139 gatcaataaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgttga 199  Q
    |||||||||||| ||| || ||| ||| ||||||||||||||||| ||||| || ||||||    
T  29369940 gatcaataaaagataacgtgtttggttaaaaatttacatcaaatatatcaatttttgttga 29369880  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 207
Target Start/End: Original strand, 5024670 - 5024740
Alignment:
Q  137 ttgatcaataaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgttgaatcatttt 207  Q
    ||||| |||||||||||||||||||  ||||||||||| |||||||||| ||| |||| |||| |||||||    
T  5024670 ttgataaataaaagttaatgtatttatttcaaaatttatatcaaatacaacaatttatattgactcatttt 5024740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 199
Target Start/End: Complemental strand, 30848700 - 30848616
Alignment:
Q  116 ttctaaaatataagcaaaagtttgatcaataaaagttaatgtattttgttcaaaatt--tacatcaaatacatcaacttatgttga 199  Q
    ||||||||| ||||||||| || | |||| |||| ||||||||||||||||||||||  ||||| | |||||||||||||||||||    
T  30848700 ttctaaaatgtaagcaaaaattgg-tcaacaaaaattaatgtattttgttcaaaatttgtacattagatacatcaacttatgttga 30848616  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 199
Target Start/End: Complemental strand, 24980729 - 24980651
Alignment:
Q  120 aaaatataagcaaaagtttgatcaataaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgttga 199  Q
    ||||| ||||||||| |||| |||| |||| |||||||||||||| ||||||||   ||| |||||||||||||||||||    
T  24980729 aaaatgtaagcaaaaatttg-tcaacaaaaattaatgtattttgtacaaaatttgtgtcagatacatcaacttatgttga 24980651  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 12276851 - 12276904
Alignment:
Q  146 aaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgttga 199  Q
    ||||||||||||||||  ||||||||||| |  |||||||||||||||||||||    
T  12276851 aaaagttaatgtatttgattcaaaatttatactaaatacatcaacttatgttga 12276904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 199
Target Start/End: Complemental strand, 51531583 - 51531507
Alignment:
Q  123 atataagcaaaagtttgatcaataaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgttga 199  Q
    |||||||  |||||||||| ||||||| | ||||||| |||||||||||||  | |||||||||||| || ||||||    
T  51531583 atataagagaaagtttgattaataaaaatgaatgtatcttgttcaaaatttggaccaaatacatcaatttttgttga 51531507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 207
Target Start/End: Complemental strand, 54235331 - 54235240
Alignment:
Q  115 attctaaaatataagcaaaagtttgatcaataaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgttgaatcatttt 207  Q
    ||||| |||||||| ||||| || | |||| |||||||||||||||| |||||||||||  |  ||||||||||| |||| |||| |||||||    
T  54235331 attcttaaatataaacaaaaatt-gctcaacaaaagttaatgtatttggttcaaaatttgtactaaatacatcaatttatattgactcatttt 54235240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 199
Target Start/End: Original strand, 4423171 - 4423233
Alignment:
Q  137 ttgatcaataaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgttga 199  Q
    ||||||||||||| ||||| |||||  ||||||||||  | ||||||||||||||||| ||||    
T  4423171 ttgatcaataaaaattaatatatttgattcaaaatttgtaccaaatacatcaacttatattga 4423233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 207
Target Start/End: Complemental strand, 5496925 - 5496869
Alignment:
Q  151 ttaatgtattttgttcaaaatttacatcaaatacatcaacttatgttgaatcatttt 207  Q
    ||||||||||| |||||||||||  | |||||| |||||||||| |||| |||||||    
T  5496925 ttaatgtatttggttcaaaatttgtaccaaataaatcaacttatattgactcatttt 5496869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 199
Target Start/End: Complemental strand, 51300 - 51247
Alignment:
Q  146 aaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgttga 199  Q
    |||| ||||||||||| |||||||||||| | ||||||||||||||||||||||    
T  51300 aaaaattaatgtatttagttcaaaatttataccaaatacatcaacttatgttga 51247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 207
Target Start/End: Original strand, 47783104 - 47783170
Alignment:
Q  141 tcaataaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgttgaatcatttt 207  Q
    |||| |||||||||||||||| |||||||||||  |||| |||||||  |||||||||| |||||||    
T  47783104 tcaaaaaaagttaatgtatttggttcaaaatttgtatcagatacatcggcttatgttgactcatttt 47783170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 197
Target Start/End: Original strand, 18364203 - 18364250
Alignment:
Q  150 gttaatgtattttgttcaaaatttacatcaaatacatcaacttatgtt 197  Q
    ||||||||||||||||||||||||   ||| |||||||||||||||||    
T  18364203 gttaatgtattttgttcaaaatttgtgtcagatacatcaacttatgtt 18364250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 195
Target Start/End: Complemental strand, 32221574 - 32221500
Alignment:
Q  120 aaaatataagcaaaagtttgatcaataaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatg 195  Q
    ||||| ||||||||| || | |||| |||||||||||||||| |||||||||||  | |||||||||||| |||||    
T  32221574 aaaatgtaagcaaaaattag-tcaacaaaagttaatgtatttggttcaaaatttgtaccaaatacatcaatttatg 32221500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 198
Target Start/End: Complemental strand, 26914553 - 26914476
Alignment:
Q  120 aaaatataagcaaaagtttgatcaataaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgttg 198  Q
    ||||| ||||||||| || |||||| |||| ||||||||| | |||||||||||| |  ||||||||||||||| ||||    
T  26914553 aaaatgtaagcaaaaatt-gatcaacaaaaattaatgtatgtggttcaaaatttatactaaatacatcaacttaagttg 26914476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 199
Target Start/End: Original strand, 31280158 - 31280239
Alignment:
Q  117 tctaaaatataagcaaaagtttgatcaataaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgttga 199  Q
    ||||||||||||| |||| || |||||| |||| ||||||||||| |||||||||||  | || |||||| || |||||||||    
T  31280158 tctaaaatataagtaaaaatt-gatcaacaaaatttaatgtatttggttcaaaatttgtaccatatacattaatttatgttga 31280239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 197
Target Start/End: Original strand, 45610470 - 45610516
Alignment:
Q  151 ttaatgtattttgttcaaaatttacatcaaatacatcaacttatgtt 197  Q
    ||||||||||| |||||| ||||| ||||||| ||||||||||||||    
T  45610470 ttaatgtatttggttcaagatttatatcaaattcatcaacttatgtt 45610516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 194
Target Start/End: Original strand, 40955800 - 40955857
Alignment:
Q  137 ttgatcaataaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttat 194  Q
    ||||||||||||| ||| ||||||| |||||||||||  |||| |||||| |||||||    
T  40955800 ttgatcaataaaaattattgtatttagttcaaaatttgtatcatatacattaacttat 40955857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 192
Target Start/End: Complemental strand, 41343938 - 41343877
Alignment:
Q  131 aaaagtttgatcaataaaagttaatgtattttgttcaaaatttacatcaaatacatcaactt 192  Q
    |||||||||||||||  |||||| ||||||| || ||||||||| |  ||||||||||||||    
T  41343938 aaaagtttgatcaattgaagttattgtatttagtccaaaatttagactaaatacatcaactt 41343877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 199
Target Start/End: Original strand, 37937 - 37995
Alignment:
Q  141 tcaataaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgttga 199  Q
    |||| |||||||||||||||| ||| |||||||| | |||||||||||| |||| ||||    
T  37937 tcaacaaaagttaatgtatttggtttaaaatttataccaaatacatcaatttatattga 37995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 207
Target Start/End: Original strand, 35962 - 36032
Alignment:
Q  137 ttgatcaataaaagttaatgtattttgttcaaaatttacatcaaatacatcaacttatgttgaatcatttt 207  Q
    |||||||| ||  |||||||||||| || ||||||||  |||||||||||||| |||| |||| |||||||    
T  35962 ttgatcaacaaccgttaatgtatttggtacaaaatttgtatcaaatacatcaatttatattgactcatttt 36032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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