View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5557_low_28 (Length: 249)
Name: NF5557_low_28
Description: NF5557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5557_low_28 |
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| [»] chr4 (4 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 5601692 - 5601454
Alignment:
| Q |
11 |
ttatactttgctagttattattggaaatacataaatagctcttccaatatcgtcatttagggacattgaacatgtaatatcccgctgaatttgtaataaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
5601692 |
ttatactttgctagttattattggaaatacataaatagctcttccaatatcgtcatttagggacattgaacatgtaatatcccgctaaatttgtaataaa |
5601593 |
T |
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| Q |
111 |
ccgtcgaattagttgagcttgtcagaacggaaataagttctaaagggttaaatatttattgagaaaagcgaagatattcggtaaatatctcgcatatcat |
210 |
Q |
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| T |
5601592 |
ctgtcgaattagttgagcatgtcagaacggaaataagttctaaagggttaaatatttattgagaaaagcgaagatattcggtaaatatctcgcatatcat |
5601493 |
T |
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| Q |
211 |
cccaacggacttgaggaattaaagggttacaaattaaca |
249 |
Q |
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| T |
5601492 |
cccaacggacttgaggaattaaagggttacaaattaaca |
5601454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 5595499 - 5595261
Alignment:
| Q |
11 |
ttatactttgctagttattattggaaatacataaatagctcttccaatatcgtcatttagggacattgaacatgtaatatcccgctgaatttgtaataaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
5595499 |
ttatactttgctagttattattggaaatacataaatagctcttccaatatcgtcatttagggacattgaacatgtaatatcccgctaaatttgtaataaa |
5595400 |
T |
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| Q |
111 |
ccgtcgaattagttgagcttgtcagaacggaaataagttctaaagggttaaatatttattgagaaaagcgaagatattcggtaaatatctcgcatatcat |
210 |
Q |
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| T |
5595399 |
ctgtcgaattagttgagcatgtcagaacggaaataaattctaaagggttaaatatttattgagaaaagcgaagatattcggtaaatatctcgcatatcat |
5595300 |
T |
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| Q |
211 |
cccaacggacttgaggaattaaagggttacaaattaaca |
249 |
Q |
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| T |
5595299 |
cccaacggacttgaggaattaaagggttacaaattaaca |
5595261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 83 - 249
Target Start/End: Original strand, 2893197 - 2893363
Alignment:
| Q |
83 |
tgtaatatcccgctgaatttgtaataaaccgtcgaattagttgagcttgtcagaacggaaataagttctaaagggttaaatatttattgagaaaagcgaa |
182 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||| |||||| ||| ||||||||||||||||||||| || |
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| T |
2893197 |
tgtaatatcccgctgaatttgtaataaactgtcgaattagttgaacatgtcagaacggaaataatttctaatgggctaaatatttattgagaaaagctaa |
2893296 |
T |
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| Q |
183 |
gatattcggtaaatatctcgcatatcatcccaacggacttgaggaattaaagggttacaaattaaca |
249 |
Q |
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| T |
2893297 |
gatattcggtaaatatcttgcatatcatcccaacggacttgaggaattaaagagttacaaattaaca |
2893363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 7625805 - 7625876
Alignment:
| Q |
11 |
ttatactttgctagttattattggaaatacataaatagctcttccaatatcgtcatttagggacattgaaca |
82 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
7625805 |
ttatactttgctagctattattggaaatacataaatagctcttccaatatcatcattcagggacattgaaca |
7625876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 83 - 249
Target Start/End: Complemental strand, 48479948 - 48479782
Alignment:
| Q |
83 |
tgtaatatcccgctgaatttgtaataaaccgtcgaattagttgagcttgtcagaacggaaataagttctaaagggttaaatatttattgagaaaagcgaa |
182 |
Q |
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|||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
48479948 |
tgtaatatcctgctgaatttgtaataaattgtcgaattagttgagcatgtcagaacggaaataatttctaaagggttaaatatttattgagaaaagcgaa |
48479849 |
T |
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| Q |
183 |
gatattcggtaaatatctcgcatatcatcccaacggacttgaggaattaaagggttacaaattaaca |
249 |
Q |
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| T |
48479848 |
gatattcggtaaatatctcgcatatcatcccaacggacttgaggaattaaagggttacaaattaaca |
48479782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 83 - 249
Target Start/End: Original strand, 42783945 - 42784111
Alignment:
| Q |
83 |
tgtaatatcccgctgaatttgtaataaaccgtcgaattagttgagcttgtcagaacggaaataagttctaaagggttaaatatttattgagaaaagcgaa |
182 |
Q |
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||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
42783945 |
tgtaatatctcgctgaatttgtaataaactgtcgaattagttgagcatgtcagaacggaaataatttctaaagggttaaatatttattgagaaaagcgaa |
42784044 |
T |
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| Q |
183 |
gatattcggtaaatatctcgcatatcatcccaacggacttgaggaattaaagggttacaaattaaca |
249 |
Q |
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| T |
42784045 |
gatattcggtaaatatctcgcatatcattccaacggacttaaggaattaaagggttacaaattaaca |
42784111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 34630493 - 34630566
Alignment:
| Q |
11 |
ttatactttgctagttattattggaaatacataaatagctcttccaatatcgtcatttagggacattgaacatg |
84 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
34630493 |
ttatactttgctagttattattggaaatacataaatagctcttccaatatcgtcattcagggacattgaacatg |
34630566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 82 - 200
Target Start/End: Complemental strand, 19452518 - 19452400
Alignment:
| Q |
82 |
atgtaatatcccgctgaatttgtaataaaccgtcgaattagttgagcttgtcagaacggaaataagttctaaagggttaaatatttattgagaaaagcga |
181 |
Q |
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||||||||||||||| ||||| ||||| |||| | || |||||| | ||| ||||| ||| ||| || | || |||||| |||||||||||||| |||| |
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| T |
19452518 |
atgtaatatcccgctaaattttaaataatccgttgtatcagttgaacatgttagaactgaagtaatttttgaaaggttaattatttattgagaaacgcga |
19452419 |
T |
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| Q |
182 |
agatattcggtaaatatct |
200 |
Q |
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| T |
19452418 |
cgatattcggtaaatatct |
19452400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 88 - 207
Target Start/End: Complemental strand, 9393718 - 9393599
Alignment:
| Q |
88 |
tatcccgctgaatttgtaataaaccgtcgaattagttgagcttgtcagaacggaaataagttctaaagggttaaatatttattgagaaaagcgaagatat |
187 |
Q |
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|||||| |||||||| ||||||| ||| || |||||| | ||| ||||| |||||| ||||||| ||||| |||||||||||||| || ||||||| |
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| T |
9393718 |
tatcccactgaattttaaataaactatcgtatcagttgaacatgttagaacataaataatttctaaaaagttaattatttattgagaaatgcaaagatat |
9393619 |
T |
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| Q |
188 |
tcggtaaatatctcgcatat |
207 |
Q |
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| |||||| ||||||||||| |
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| T |
9393618 |
ttggtaaacatctcgcatat |
9393599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 121 - 201
Target Start/End: Complemental strand, 51845642 - 51845562
Alignment:
| Q |
121 |
agttgagcttgtcagaacggaaataagttctaaagggttaaatatttattgagaaaagcgaagatattcggtaaatatctc |
201 |
Q |
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|||||| | ||||||||| |||||| |||| || ||| || |||||||||||||| ||||| |||||||||||||||||| |
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| T |
51845642 |
agttgaacatgtcagaacaaaaataatttctgaaaggtaaattatttattgagaaatgcgaaaatattcggtaaatatctc |
51845562 |
T |
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Back To:
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