View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5557_low_29 (Length: 246)
Name: NF5557_low_29
Description: NF5557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5557_low_29 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 39581074 - 39581301
Alignment:
| Q |
18 |
tgaagcagcaagctatatctaggaaaacactctgagcatacggctccaacacatcatagcttacttttagcacatcttgaatcccctttacgaggaatcc |
117 |
Q |
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| T |
39581074 |
tgaagcagcaagctatatctaggaaaacactctgagcatacggctgcaacacatcatagcttacttttagcacatcttgaatccc-tttacgaggaatcc |
39581172 |
T |
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| Q |
118 |
tctcataatctttcaacgcatgctcccaagcttttaaactttttctagtagccaaattggagcctattacttttaaagccaatggaagaccttttgcata |
217 |
Q |
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| T |
39581173 |
tctcataatctttcaacgcatgctcccaagcttttaaactttttctagtagccaaattggagcctattacttttaaagccaatggaagaccttttgcata |
39581272 |
T |
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| Q |
218 |
accaaccgcacgagaagacatggcttcat |
246 |
Q |
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| T |
39581273 |
accaaccgcacgagaagacgtggcttcat |
39581301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 39620886 - 39620659
Alignment:
| Q |
18 |
tgaagcagcaagctatatctaggaaaacactctgagcatacggctccaacacatcatagcttacttttagcacatcttgaatcccctttacgaggaatcc |
117 |
Q |
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| T |
39620886 |
tgaagaagcatgctatatctaggaaaacactctgggcattgggctccaacacattgtagcttacttggagcacctcttgaattcc-tctacgtggaatcc |
39620788 |
T |
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| Q |
118 |
tctcataatctttcaacgcatgctcccaagcttttaaactttttctagtagccaaattggagcctattacttttaaagccaatggaagaccttttgcata |
217 |
Q |
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| T |
39620787 |
tgtcgtaatttttcaatgcatcttcccaagctcttaaactctttccaccacccaaattagaacctattacttttaaagccaatggaagacccttggcata |
39620688 |
T |
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| Q |
218 |
accaaccgcacgagaagacatggcttcat |
246 |
Q |
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| T |
39620687 |
tccaaccgcacgagaagacacagcttcat |
39620659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 219
Target Start/End: Original strand, 7761716 - 7761765
Alignment:
| Q |
170 |
caaattggagcctattacttttaaagccaatggaagaccttttgcataac |
219 |
Q |
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| T |
7761716 |
caaattggatcctattgcttttaaagccaatggaataccttttgcataac |
7761765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 219
Target Start/End: Original strand, 7754621 - 7754666
Alignment:
| Q |
174 |
ttggagcctattacttttaaagccaatggaagaccttttgcataac |
219 |
Q |
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| T |
7754621 |
ttggatcctattactcttaaagccaatggaataccctttgcataac |
7754666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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