View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5557_low_3 (Length: 576)
Name: NF5557_low_3
Description: NF5557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5557_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 538; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 18 - 567
Target Start/End: Original strand, 51112422 - 51112971
Alignment:
| Q |
18 |
ctttggtcttctctgtagcatcacctgcatactctttggtcttttgtgcagcatcacctgcatactctttggacttgtgcgctgcaccagtggcatattc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51112422 |
ctttggtcttctctgtagcatcacctgcatactctttggttttttgtgcagcatcacctgcatactctttggacttgtgcgctgcaccagtggcatattc |
51112521 |
T |
|
| Q |
118 |
tttggctttctgtgcagccttctgagcagcattagtagcatattctttggccttctgtgcagcactacctgtgtattctccagccttatgaatagcttca |
217 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51112522 |
tttggctttctgtgcagccttctgagcagcatcagtagcatattctttggccttctgtgcagcactacctgtgtattctccagccttatgaatagcttca |
51112621 |
T |
|
| Q |
218 |
ccggcaaagtctctgttgtcctctgcatcatcatcatcatctgcatagctttcgtcagcagcataatgtttggtcttttcagaagcatcagtggcataat |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
51112622 |
ccggcaaagtctctgttgtcctctgcatcatcatcatcatctgcatagctttcgtcagcagcataatgtttggtcttctcagaagcatcagtggcataat |
51112721 |
T |
|
| Q |
318 |
ctctgattttcttagaagcatcccaagcatagcctttggttttctcagcagcatcatgggcatggtcactggctttttgagcagtttccttggacttgtg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51112722 |
ctctgattttcttagaagcatcccaagcatagcctttggttttctcagcagcatcatgggcatggtcactggctttttgagcagtttccttggacttgtg |
51112821 |
T |
|
| Q |
418 |
tgcagtttcatctgcatagtgtttggttttgtgtgcagcgtctgaagcatattcagaggctttatcagtggtggtgctgtccttatctttgtctttgaag |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51112822 |
tgcagtttcatctgcatagtgtttggttttgtgtgcagcgtctgaagcatattcagaggctttatcagtggtggtgctgtccttatctttgtctttgaag |
51112921 |
T |
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| Q |
518 |
ccaaggccttcggtgattttctctttggcccactcagtccatgtctctgc |
567 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51112922 |
ccaaggccttcggtgattttctctttggcccactcagtccatgtctctgc |
51112971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 51112389 - 51112460
Alignment:
| Q |
18 |
ctttggtcttctctgtagcatcacctgcatactctttggtcttttgtgcagcatcacctgcatactctttgg |
89 |
Q |
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||||||| |||| || |||||| |||||||||||||||||||| | || ||||||||||||||||||||||| |
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| T |
51112389 |
ctttggttttctgtgcagcatcgcctgcatactctttggtcttctctgtagcatcacctgcatactctttgg |
51112460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 118
Target Start/End: Original strand, 51112028 - 51112096
Alignment:
| Q |
50 |
tctttggtcttttgtgcagcatcacctgcatactctttggacttgtgcgctgcaccagtggcatattct |
118 |
Q |
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||||||||||| | |||||||||||||||||| ||||| ||||||| |||||| || ||||||||||| |
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| T |
51112028 |
tctttggtcttctctgcagcatcacctgcatagtctttagacttgtatgctgcagcattggcatattct |
51112096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 51112356 - 51112427
Alignment:
| Q |
18 |
ctttggtcttctctgtagcatcacctgcatactctttggtcttttgtgcagcatcacctgcatactctttgg |
89 |
Q |
| |
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||||| |||||| |||||| |||| ||||| |||||||| || ||||||||||| |||||||||||||||| |
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| T |
51112356 |
ctttgctcttctgagtagcaccaccagcatagtctttggttttctgtgcagcatcgcctgcatactctttgg |
51112427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 89
Target Start/End: Original strand, 51111958 - 51112013
Alignment:
| Q |
34 |
agcatcacctgcatactctttggtcttttgtgcagcatcacctgcatactctttgg |
89 |
Q |
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||||||||||||||| ||||||| ||||||||||| ||||| ||||| ||||||| |
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| T |
51111958 |
agcatcacctgcataatctttggctttttgtgcagcttcaccagcatagtctttgg |
51112013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 121
Target Start/End: Original strand, 51112301 - 51112360
Alignment:
| Q |
62 |
tgtgcagcatcacctgcatactctttggacttgtgcgctgcaccagtggcatattctttg |
121 |
Q |
| |
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|||||||||||||| ||||||||||| ||||||| |||||| |||| ||||| |||||| |
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| T |
51112301 |
tgtgcagcatcaccagcatactctttagacttgtatgctgcatcagttgcatactctttg |
51112360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 51112210 - 51112280
Alignment:
| Q |
25 |
cttctctgtagcatcacctgcatactctttggtcttttgtgcagcatcacctgcatactctttggacttgt |
95 |
Q |
| |
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||||| || |||||||| | |||| ||||||||||| | ||| |||||||||||||| ||||||| ||||| |
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| T |
51112210 |
cttctgtgcagcatcacttccataatctttggtcttctctgctgcatcacctgcataatctttggtcttgt |
51112280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 51112236 - 51112278
Alignment:
| Q |
18 |
ctttggtcttctctgtagcatcacctgcatactctttggtctt |
60 |
Q |
| |
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||||||||||||||| |||||||||||||| ||||||||||| |
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|
| T |
51112236 |
ctttggtcttctctgctgcatcacctgcataatctttggtctt |
51112278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 51111874 - 51111939
Alignment:
| Q |
49 |
ctctttggtcttttgtgcagcatcacctgcatactctttggacttgtgcgctgcaccagtggcata |
114 |
Q |
| |
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||||||||| ||||| ||||||||||||||||| ||||| || |||| |||||| || ||||||| |
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| T |
51111874 |
ctctttggttttttgagcagcatcacctgcatagtctttagatttgtatgctgcatcattggcata |
51111939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 51112029 - 51112065
Alignment:
| Q |
18 |
ctttggtcttctctgtagcatcacctgcatactcttt |
54 |
Q |
| |
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||||||||||||||| ||||||||||||||| ||||| |
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| T |
51112029 |
ctttggtcttctctgcagcatcacctgcatagtcttt |
51112065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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