View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5557_low_31 (Length: 239)
Name: NF5557_low_31
Description: NF5557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5557_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 34490376 - 34490592
Alignment:
| Q |
18 |
cttcatcatttaccacccacacatttgactacaaatgatgtatacgtgaattttaaccataatattatatttttcttcttctcggccaaaaaataatgtt |
117 |
Q |
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| T |
34490376 |
cttcaccatttaccacccacacatttgactacaaatgacgtatatgtgaattttaaccacaatatt---tttttcttcttctcggccaaaatataatgtt |
34490472 |
T |
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| Q |
118 |
gttcttgtaaaataaatttggaaaattaaaagcccctcagtctctttacaattgtcactttttctacaaattatattcttatttaactattgaaatttca |
217 |
Q |
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| T |
34490473 |
gttcttgtaaaataaatttggaaaattaaaagcccctcagtctctttacaattgtcactttttctacaaattatattcttatttaactattgaaatttca |
34490572 |
T |
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| Q |
218 |
aggtttttatttatcatgat |
237 |
Q |
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| T |
34490573 |
aggtttttatttatcatgat |
34490592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 50 - 239
Target Start/End: Original strand, 27631243 - 27631430
Alignment:
| Q |
50 |
aaatgatgtatacgtgaattttaaccataatattatatttttcttcttctcggccaaaaaataatgttgttcttgtaaaataaatttggaaaattaaaag |
149 |
Q |
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| T |
27631243 |
aaatgacgtatacgtgaattttaaccacaatatttt--ttttcttcttctcagccaaaaattaatgttgttcttattaaataaatttggaaaattaaaag |
27631340 |
T |
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| Q |
150 |
cccctcagtctctttacaattgtcactttttctacaaattatattcttatttaactattgaaatttcaaggtttttatttatcatgatgt |
239 |
Q |
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| T |
27631341 |
cccctcagtctctttacaattgtcactttttctaagaaatttattcttatttaactacagaaatttcaaggtttttatttattatgatgt |
27631430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 50 - 239
Target Start/End: Original strand, 34514563 - 34514750
Alignment:
| Q |
50 |
aaatgatgtatacgtgaattttaaccataatattatatttttcttcttctcggccaaaaaataatgttgttcttgtaaaataaatttggaaaattaaaag |
149 |
Q |
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| T |
34514563 |
aaatgacgtatacgtgaattttaaccacaat-ttct-tttttcttcttctcagccaaaaattaatgctgttcttataaaataaatttggaaaattataag |
34514660 |
T |
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| Q |
150 |
cccctcagtctctttacaattgtcactttttctacaaattatattcttatttaactattgaaatttcaaggtttttatttatcatgatgt |
239 |
Q |
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| T |
34514661 |
cccctcagtctcttcacaattgtcactttttctaagaaatttattcttatttaactacagaaatttcaaggtttttatttatcatgatgt |
34514750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 163
Target Start/End: Original strand, 27625243 - 27625302
Alignment:
| Q |
104 |
caaaaaataatgttgttcttgtaaaataaatttggaaaattaaaagcccctcagtctctt |
163 |
Q |
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| T |
27625243 |
caaaaaataattttattcttacaaaataaatttggaaaaataaaatcccctcagtttctt |
27625302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 34511035 - 34511089
Alignment:
| Q |
104 |
caaaaaataatgttgttcttgtaaaataaatttggaaaattaaaagcccctcagt |
158 |
Q |
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| T |
34511035 |
caaaaaataattttattcttacaaaataaatttggaaaaataaaatcccctcagt |
34511089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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