View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5557_low_34 (Length: 213)

Name: NF5557_low_34
Description: NF5557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5557_low_34
NF5557_low_34
[»] chr3 (2 HSPs)
chr3 (17-133)||(27906723-27906839)
chr3 (127-200)||(27907056-27907129)
[»] chr5 (6 HSPs)
chr5 (28-133)||(42799869-42799975)
chr5 (17-133)||(25514363-25514485)
chr5 (127-197)||(42803323-42803393)
chr5 (129-190)||(42800197-42800258)
chr5 (18-85)||(42803033-42803100)
chr5 (17-90)||(25520890-25520965)
[»] chr1 (1 HSPs)
chr1 (17-133)||(7387725-7387837)


Alignment Details
Target: chr3 (Bit Score: 97; Significance: 7e-48; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 27906723 - 27906839
Alignment:
Q  17 caatgattggtaaaaaacatttgaataccacttatcataccatatgacagaaaacacatttcaaagtactagtatattagccacaagcacatgctgcaga 116  Q
    ||||||||||||||| |||||||||||||||||||||||||| | |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  27906723 caatgattggtaaaatacatttgaataccacttatcataccacaggacagaaaccacatttcaaagtgctagtatattagccacaagcacatgctgcaga 27906822  T
Q  117 aatgagttggaaatgta 133  Q
    |||||||||||||||||    
T  27906823 aatgagttggaaatgta 27906839  T

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Target: chr3; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 127 - 200
Target Start/End: Original strand, 27907056 - 27907129
Alignment:
Q  127 aaatgtattggagaaacatgattgtttcaactttagtttcactaatgttataaggaaataaatagtttcaaatg 200  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27907056 aaatgcattggagaaacatgattgtttcaactttagtttcactaatgctataaggaaataaatagtttcaaatg 27907129  T

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Target: chr5 (Bit Score: 67; Significance: 6e-30; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 28 - 133
Target Start/End: Original strand, 42799869 - 42799975
Alignment:
Q  28 aaaaaacatttgaataccacttatcataccatatgacagaaaacacatttcaaagtactagt-atattagccacaagcacatgctgcagaaatgagttgg 126  Q
    |||| ||||||||||||| ||||||| |||||| |||||||| ||||||||||||| ||||| |||||||||||||| |||||||||| |||||||||||    
T  42799869 aaaatacatttgaataccgcttatcacaccataggacagaaaccacatttcaaagtgctagtaatattagccacaagtacatgctgcacaaatgagttgg 42799968  T
Q  127 aaatgta 133  Q
    |||||||    
T  42799969 aaatgta 42799975  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 133
Target Start/End: Complemental strand, 25514485 - 25514363
Alignment:
Q  17 caatgattggtaaaaaacatttgaatacc--acttatcataccatatgacagaaaacacatttcaaagtactagta----tattagccacaagcacatgc 110  Q
    |||||||||| |||| ||||||||||||   | |||||| |||||| |||||||| ||||||||||||| ||||||    ||||||||||||| ||||||    
T  25514485 caatgattgggaaaatacatttgaatacagaatttatcacaccatacgacagaaaccacatttcaaagtgctagtaatattattagccacaagtacatgc 25514386  T
Q  111 tgcagaaatgagttggaaatgta 133  Q
    |||||||||||||||||||||||    
T  25514385 tgcagaaatgagttggaaatgta 25514363  T

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Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 127 - 197
Target Start/End: Original strand, 42803323 - 42803393
Alignment:
Q  127 aaatgtattggagaaacatgattgtttcaactttagtttcactaatgttataaggaaataaatagtttcaa 197  Q
    |||||||||||||||||||||||||| |||| |||||||||| |||| |||||| ||||||||||||||||    
T  42803323 aaatgtattggagaaacatgattgttgcaaccttagtttcacaaatggtataagaaaataaatagtttcaa 42803393  T

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Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 129 - 190
Target Start/End: Original strand, 42800197 - 42800258
Alignment:
Q  129 atgtattggagaaacatgattgtttcaactttagtttcactaatgttataaggaaataaata 190  Q
    ||||||||||||||||||||||||||| ||||||||| || |||| ||||||||||||||||    
T  42800197 atgtattggagaaacatgattgtttcagctttagttttacaaatggtataaggaaataaata 42800258  T

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Target: chr5; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 42803033 - 42803100
Alignment:
Q  18 aatgattggtaaaaaacatttgaataccacttatcataccatatgacagaaaacacatttcaaagtac 85  Q
    ||||||||| |||| ||||||||||||||||||||| |||||| |||||||| | |||||||||||||    
T  42803033 aatgattgggaaaatacatttgaataccacttatcacaccataggacagaaaccgcatttcaaagtac 42803100  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 25520890 - 25520965
Alignment:
Q  17 caatgattggtaaaaaacatttgaatacc--acttatcataccatatgacagaaaacacatttcaaagtactagta 90  Q
    |||||||||| |||| ||||||||||||   |||||||| |||||| |||||||| ||||||||||||| ||||||    
T  25520890 caatgattgggaaaatacatttgaatacataacttatcacaccatacgacagaaatcacatttcaaagtgctagta 25520965  T

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Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 133
Target Start/End: Complemental strand, 7387837 - 7387725
Alignment:
Q  17 caatgattggtaaaaaacatttgaataccacttatcataccatatgacagaaaacacatttcaaagtactagta----tattagccacaagcacatgctg 112  Q
    |||||| |||||||| ||||||||||||||| ||||||||        ||||| ||||||||||||| ||||||    ||||||||||||| ||||||||    
T  7387837 caatgactggtaaaatacatttgaataccacatatcatac--------agaaaccacatttcaaagtgctagtactattattagccacaagtacatgctg 7387746  T
Q  113 cagaaatgagttggaaatgta 133  Q
    |||||||||||||||||||||    
T  7387745 cagaaatgagttggaaatgta 7387725  T

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