View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5557_low_35 (Length: 204)
Name: NF5557_low_35
Description: NF5557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5557_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 16 - 186
Target Start/End: Complemental strand, 37359882 - 37359712
Alignment:
| Q |
16 |
caaataatagttcctttcaaaatttatacctcatatccgtgagcaaggagacgctgagaaactaattcagcattttgtaagaattcttcttcagaaatta |
115 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37359882 |
caaataatagttcctttcagtatttatacctcatatccgtgagcaaggagacgttgagaaactaattcagcattttgtaagaattcttcttcagaaatta |
37359783 |
T |
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| Q |
116 |
tccaagaaaaggcatcataggaattccaacctcttggtggaaaggcagcttgttgtatgtcactcttagtt |
186 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37359782 |
tccaagaaaaggcatcataggaattccaacctcttggtggaaaggcagcttgttgtatgtcacttttagtt |
37359712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 16 - 186
Target Start/End: Original strand, 37368182 - 37368352
Alignment:
| Q |
16 |
caaataatagttcctttcaaaatttatacctcatatccgtgagcaaggagacgctgagaaactaattcagcattttgtaagaattcttcttcagaaatta |
115 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37368182 |
caaataatagttcctttcagtatttatacctcatatccgtgagcaaggagacgttgagaaactaattcagcattttgtaagaattcttcttcagaaatta |
37368281 |
T |
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| Q |
116 |
tccaagaaaaggcatcataggaattccaacctcttggtggaaaggcagcttgttgtatgtcactcttagtt |
186 |
Q |
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| T |
37368282 |
tccaagaaaaggcatcataggaattccaacctcttggtggaaaggcagcttgttgtatgtcacttttagtt |
37368352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 26 - 155
Target Start/End: Complemental strand, 37374691 - 37374562
Alignment:
| Q |
26 |
ttcctttcaaaatttatacctcatatccgtgagcaaggagacgctgagaaactaattcagcattttgtaagaattcttcttcagaaattatccaagaaaa |
125 |
Q |
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| T |
37374691 |
ttcctttcagtatttatacctcatatccatacacacggagacgctgagaaacaatttgagcattctgtaagaattcttgttcagaaattatccaggaaaa |
37374592 |
T |
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| Q |
126 |
ggcatcataggaattccaacctcttggtgg |
155 |
Q |
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| T |
37374591 |
tgcatcataggaattccaacctcttggtgg |
37374562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 37 - 181
Target Start/End: Complemental strand, 37382016 - 37381872
Alignment:
| Q |
37 |
atttatacctcatatccgtgagcaaggagacgctgagaaactaattcagcattttgtaagaattcttcttcagaaattatccaagaaaaggcatcatagg |
136 |
Q |
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| T |
37382016 |
atttatacctcgtatccatgtggacggagacgctgagaaataatttcagcattctgtaagaactcttgttcagaaattatccaggaaaaggcatcatagg |
37381917 |
T |
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| Q |
137 |
aattccaacctcttggtggaaaggcagcttgttgtatgtcactct |
181 |
Q |
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| T |
37381916 |
aattccaacctcttggtggcaagcctacttgctgtatgttactct |
37381872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 38 - 181
Target Start/End: Original strand, 41230572 - 41230715
Alignment:
| Q |
38 |
tttatacctcatatccgtgagcaaggagacgctgagaaactaattcagcattttgtaagaattcttcttcagaaattatccaagaaaaggcatcatagga |
137 |
Q |
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|||||||||||||||| |||||| | |||||||||||||||| ||||||||| |||||||||||||||||||| |||||||| ||||| | ||| ||||| |
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| T |
41230572 |
tttatacctcatatccatgagcatgaagacgctgagaaactatttcagcattctgtaagaattcttcttcagatattatccacgaaaatgaatcgtagga |
41230671 |
T |
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| Q |
138 |
attccaacctcttggtggaaaggcagcttgttgtatgtcactct |
181 |
Q |
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| T |
41230672 |
attccaccctcttggtggcaaagcagcttgttgtaggtcactct |
41230715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 41 - 155
Target Start/End: Complemental strand, 39243208 - 39243094
Alignment:
| Q |
41 |
atacctcatatccgtgagcaaggagacgctgagaaactaattcagcattttgtaagaattcttcttcagaaattatccaagaaaaggcatcataggaatt |
140 |
Q |
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||||||| ||||| ||| | |||| ||||||||||||| || |||| |||||||||| |||| ||||||||||||||| ||||| |||||||||||| |
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| T |
39243208 |
atacctcgtatccatgatcgcggagccgctgagaaactatttgagcactttgtaagaactcttgttcagaaattatccagcaaaagcaatcataggaatt |
39243109 |
T |
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| Q |
141 |
ccaacctcttggtgg |
155 |
Q |
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| T |
39243108 |
ccaacctcttggtgg |
39243094 |
T |
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