View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5557_low_4 (Length: 473)
Name: NF5557_low_4
Description: NF5557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5557_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 437; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Complemental strand, 24693888 - 24693427
Alignment:
| Q |
1 |
aactcaaaactatccaatcatttcattttgccaccctaaagttgattagaacacttagtagaagaaattcaacgactaatctttctacaattaaatttca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24693888 |
aactcaaaactatccaatcatttcattttgccaccctaaagttgattagaacacttagtagaagaaattcaacgactaatctttctacaattaaatttca |
24693789 |
T |
|
| Q |
101 |
nnnnnnnataaaattaaattttgattatttgaactttgtaggtgaaacttacatatattgtttatttcaaatcaatagaatgttgaaataaacatatatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24693788 |
tttttttataaaattaaattttgattatttgaactttgtaggtgaaacttacatatattgtttatttcaaatcaatagaatgttgaaataaacatatatt |
24693689 |
T |
|
| Q |
201 |
gtatcaaccttgaatgttgaaataaactgtatagtgttcatccctaaagttgaacaatggctctaacagaaaattctggtttcctcctttagccacaaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
24693688 |
gtatcaaccttgaatgttgaaataaactgtatagtgttcatccctaaagttgaacaatggctctaaaagaaaattctggtttcctcctttagccacaaag |
24693589 |
T |
|
| Q |
301 |
ctgataggatggtattgccttaatcctttcccggaaacgaaacttgctgcttggttaaaactagcttcagaatcagacttgcaccttagcttaactcctg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24693588 |
ctgataggatggtattgccttaatcctttcccggaaacgaaacttgctgcttggttaaaactagcttcagaatcagacttgcaccttagcttaactcctg |
24693489 |
T |
|
| Q |
401 |
aaccagagctcatatcgctatacacgtaacaatctttattgctttgtgattgtaaagatatt |
462 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24693488 |
aaccagagctcatatcgctatacacgtaacaatctttattgctttgtgattgtaaagatatt |
24693427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 199 - 462
Target Start/End: Complemental strand, 24733139 - 24732876
Alignment:
| Q |
199 |
ttgtatcaaccttgaatgttgaaataaactgtatagtgttcatccctaaagttgaacaatggctctaacagaaaattctggtttcctcctttagccacaa |
298 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||| || ||||||||||||||||||||||| ||||| ||||||||||||||| | |||||||| |||| |
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|
| T |
24733139 |
ttgtatcaatcttgaatattgaaataaactgtataatgctcatccctaaagttgaacaatgggtctaaaagaaaattctggtttgcacctttagcaacaa |
24733040 |
T |
|
| Q |
299 |
agctgataggatggtattgccttaatcctttcccggaaacgaaacttgctgcttggttaaaactagcttcagaatcagacttgcaccttagcttaactcc |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| ||||| | ||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
24733039 |
agctgataggatggtattgccttaatcctttgccggaaacaaaactagttgcttggttaaaactagcttcagaagcagtcttgcaccttagcttaactcc |
24732940 |
T |
|
| Q |
399 |
tgaaccagagctcatatcgctatacacgtaacaatctttattgctttgtgattgtaaagatatt |
462 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
24732939 |
tgaaccagcactcatatcgctatgcacgtaacaatctttattgctttgtgattctaaagatatt |
24732876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 195 - 462
Target Start/End: Complemental strand, 24724431 - 24724164
Alignment:
| Q |
195 |
tatattgtatcaaccttgaatgttgaaataaactgtatagtgttcatccctaaagttgaacaatggctctaacagaaaattctggtttcctcctttagcc |
294 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||| ||||||||| ||||||||||| ||| | ||||||||| |
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|
| T |
24724431 |
tatactgtatcaaccttgaaggttgaaataaactgtatagtgctcatccctgaagttgaacagtggctctaaaagaaaattctgatttgcacctttagcc |
24724332 |
T |
|
| Q |
295 |
acaaagctgataggatggtattgccttaatcctttcccggaaacgaaacttgctgcttggttaaaactagcttcagaatcagacttgcaccttagcttaa |
394 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| ||||| ||||| ||||||||||||||||| ||||||| ||||||||||| ||||||| |
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| T |
24724331 |
acaaagctgataggattgtattgccttaatcctttccctgaaacaaaactatttgcttggttaaaactagtttcagaagcagacttgcacacaagcttaa |
24724232 |
T |
|
| Q |
395 |
ctcctgaaccagagctcatatcgctatacacgtaacaatctttattgctttgtgattgtaaagatatt |
462 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
24724231 |
ctcctgaaccagcactcatatcgctatgcacgtaacaatctttattgctttgtgattctaaagatatt |
24724164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 199 - 459
Target Start/End: Complemental strand, 24748307 - 24748047
Alignment:
| Q |
199 |
ttgtatcaaccttgaatgttgaaataaactgtatagtgttcatccctaaagttgaacaatggctctaacagaaaattctggtttcctcctttagccacaa |
298 |
Q |
| |
|
||||||||| ||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||| || |
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|
| T |
24748307 |
ttgtatcaatcttgaatattgaaataaattgtatagttctcatccctaaagttgaacaatggctctaaaataaaattctggtttgctcctttagccaaaa |
24748208 |
T |
|
| Q |
299 |
agctgataggatggtattgccttaatcctttcccggaaacgaaacttgctgcttggttaaaactagcttcagaatcagacttgcaccttagcttaactcc |
398 |
Q |
| |
|
| ||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||| |||||||||| || |||||||||| |
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| T |
24748207 |
aactggtaggatggtattgccttaatcctttcccggaaacgaaacttgtttcttggttaaaacttgcttcagatccagacttgcatctgagcttaactct |
24748108 |
T |
|
| Q |
399 |
tgaaccagagctcatatcgctatacacgtaacaatctttattgctttgtgattgtaaagat |
459 |
Q |
| |
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|||||||| ||||||||| |||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
24748107 |
tgaaccagcgctcatatcactatgcacgtaacaatctttattgctttgtgattctaaagat |
24748047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 223 - 311
Target Start/End: Complemental strand, 24706882 - 24706793
Alignment:
| Q |
223 |
taaactgtatagtgttcatccctaaagttgaacaatggctctaaca-gaaaattctggtttcctcctttagccacaaagctgataggatg |
311 |
Q |
| |
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|||||||||| ||| |||| | | ||||| |||||||||||||| | ||||||| |||||||||||||||||||||||| ||||| |||| |
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| T |
24706882 |
taaactgtattgtgctcattcttgaagttaaacaatggctctaaaaagaaaattatggtttcctcctttagccacaaagttgataagatg |
24706793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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