View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5557_low_6 (Length: 438)
Name: NF5557_low_6
Description: NF5557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5557_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 11 - 420
Target Start/End: Original strand, 6577871 - 6578273
Alignment:
| Q |
11 |
cagagaagagccaacgatataattaattgatgagggtgggttactgcagatgtgataaagagaaatgcagagaaaatcaaagaaccgctaagaaatcaag |
110 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6577871 |
cagagaagagccaacgataaaatt----gatgagggtgggttactgcagatgtgataaagagaaatgcagagaaaatcaaagaaccgctaagaaatcaag |
6577966 |
T |
|
| Q |
111 |
gaacccannnnnnnaattagagaaataactcatgtttaccatgtagaaaaagcaagtatttaacttgttgagctttgatagtgtgttttagcagaattct |
210 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6577967 |
gaacccatttttttaattagagaaataactcatgtttaccatatagaaagagcaagtatttaacttgttgagctttgatagtgtgttttagcagaattct |
6578066 |
T |
|
| Q |
211 |
ttttgatgattattaaaataggtttccaattcgatgcacagtgaagaagaagaaggtgacttttcatgtacaaagtttatgaaaagtgatgaaaaatgat |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6578067 |
ttttgatgattattaaaataggtttccaattcgatgcacagtgaag---aagaaggtgacttttcatgtacaaagtttatgaaaagtgatgaaaaatgat |
6578163 |
T |
|
| Q |
311 |
gatgtggaccaatgaatgaaagagtgtctaagagagagtgcaagagagattgtccttagcatccctcgtggctgccttgttgttgagatcaatctctagc |
410 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6578164 |
gatgtggaccaatgaatgaaaaagtgtctaagagagagtgcaagagagattgtccttagcatccctcgtggctgccttgttgttgagatcaatctctagc |
6578263 |
T |
|
| Q |
411 |
tgcttcatct |
420 |
Q |
| |
|
|||||||||| |
|
|
| T |
6578264 |
tgcttcatct |
6578273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 302 - 377
Target Start/End: Complemental strand, 42202086 - 42202011
Alignment:
| Q |
302 |
aaaaatgatgatgtggaccaatgaatgaaagagtgtctaagagagagtgcaagagagattgtccttagcatccctc |
377 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| |||| |||| | ||| || |||||||||||| |
|
|
| T |
42202086 |
aaaaatgatgatgtggaccaatgaataaaagagtgtctaagagaaagtgtaagatatattatcgttagcatccctc |
42202011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 377
Target Start/End: Original strand, 31305830 - 31305880
Alignment:
| Q |
327 |
tgaaagagtgtctaagagagagtgcaagagagattgtccttagcatccctc |
377 |
Q |
| |
|
||||||||||| ||||||||||||| |||||| ||||||||||||| |||| |
|
|
| T |
31305830 |
tgaaagagtgtttaagagagagtgcgagagaggttgtccttagcattcctc |
31305880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 377
Target Start/End: Original strand, 42641467 - 42641504
Alignment:
| Q |
340 |
aagagagagtgcaagagagattgtccttagcatccctc |
377 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
42641467 |
aagagagagtgtaagagtgattgtccttagcatccctc |
42641504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University