View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5557_low_7 (Length: 433)
Name: NF5557_low_7
Description: NF5557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5557_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 163 - 417
Target Start/End: Original strand, 10148745 - 10148999
Alignment:
| Q |
163 |
tccaaccccaagagctcttaattcttcacatcctccaaagtttggctaaggattatatctatagaaagagagatgagaaacaattaacagagaagtactt |
262 |
Q |
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| T |
10148745 |
tccaaccccaagagctcttaattcttcacatcctccaaagtttggctaaggattatatctatagaaagagagatgagaaacaattaacagagaagtactt |
10148844 |
T |
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| Q |
263 |
tagaagaaatctttgtgcttctattatgctatccacgttggaatgacaaacaatagaacatttgggttggggatttggcaatggcataacnnnnnnncaa |
362 |
Q |
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| T |
10148845 |
tagaagaaatctttgtgcttctattatgctatccacgttggaatgacaaacaatagaacatttgggttggggatttggcaatggcataacaaaaaaacaa |
10148944 |
T |
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| Q |
363 |
actctttgaataaagctcttgaatcttggtccaatttattggaagatattgttgc |
417 |
Q |
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| T |
10148945 |
actccttgaataaagctcttgaatcttggtccaatttaatggaagatattgttgc |
10148999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 10148582 - 10148681
Alignment:
| Q |
1 |
gttaaagtgttt-attaaagcaattatgtatcctttcaaatgaaaatgagtagaatttgataccatataaataatttgaattgatttgcacgatcataat |
99 |
Q |
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| T |
10148582 |
gttaaagtgttttattaaagcaattatgtatcctttcaaatgaaaatgagtagaatttgataccatataaataatttgaattgatttgcacgatcataat |
10148681 |
T |
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