View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5557_low_8 (Length: 430)

Name: NF5557_low_8
Description: NF5557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5557_low_8
NF5557_low_8
[»] chr1 (20 HSPs)
chr1 (158-414)||(32882356-32882606)
chr1 (71-254)||(32879406-32879588)
chr1 (15-143)||(32882155-32882282)
chr1 (265-355)||(6583117-6583207)
chr1 (265-383)||(27102281-27102398)
chr1 (267-409)||(27031687-27031827)
chr1 (265-354)||(31290921-31291010)
chr1 (267-414)||(7857747-7857893)
chr1 (267-414)||(24659023-24659168)
chr1 (265-413)||(34774961-34775110)
chr1 (265-359)||(16147648-16147742)
chr1 (266-352)||(16577352-16577438)
chr1 (269-369)||(41126362-41126462)
chr1 (269-414)||(10785301-10785447)
chr1 (265-386)||(9313179-9313298)
chr1 (267-411)||(46814311-46814454)
chr1 (301-381)||(52278430-52278509)
chr1 (301-412)||(5459289-5459399)
chr1 (333-412)||(46692662-46692739)
chr1 (334-412)||(5389265-5389340)
[»] chr7 (21 HSPs)
chr7 (265-408)||(8745243-8745388)
chr7 (265-411)||(24324640-24324788)
chr7 (267-414)||(34390056-34390202)
chr7 (266-408)||(3478443-3478583)
chr7 (265-414)||(6716578-6716727)
chr7 (267-414)||(35745663-35745813)
chr7 (267-420)||(47325720-47325873)
chr7 (265-351)||(42533158-42533244)
chr7 (334-410)||(6585043-6585118)
chr7 (267-412)||(5860131-5860276)
chr7 (267-411)||(44353407-44353552)
chr7 (262-315)||(36449171-36449224)
chr7 (333-412)||(31971977-31972054)
chr7 (267-402)||(33435203-33435337)
chr7 (334-414)||(38306423-38306501)
chr7 (266-413)||(23983298-23983444)
chr7 (265-410)||(1320885-1321030)
chr7 (265-315)||(44755679-44755729)
chr7 (334-411)||(3867278-3867353)
chr7 (266-315)||(48058595-48058644)
chr7 (267-311)||(41089691-41089735)
[»] chr2 (20 HSPs)
chr2 (266-420)||(16952219-16952372)
chr2 (266-420)||(17022884-17023037)
chr2 (266-420)||(17060190-17060343)
chr2 (266-410)||(10173425-10173567)
chr2 (267-410)||(14106367-14106509)
chr2 (265-414)||(37770482-37770633)
chr2 (269-414)||(5254352-5254491)
chr2 (265-362)||(34230291-34230388)
chr2 (270-414)||(7874388-7874530)
chr2 (265-359)||(1269573-1269668)
chr2 (265-386)||(7696052-7696172)
chr2 (267-417)||(39338703-39338853)
chr2 (268-386)||(41086667-41086785)
chr2 (333-410)||(7460836-7460912)
chr2 (265-328)||(13337364-13337427)
chr2 (267-412)||(387268-387412)
chr2 (267-416)||(14405292-14405441)
chr2 (333-412)||(17116722-17116800)
chr2 (301-412)||(10524228-10524338)
chr2 (347-410)||(12342992-12343055)
[»] chr3 (24 HSPs)
chr3 (267-414)||(23328191-23328337)
chr3 (265-386)||(14879526-14879646)
chr3 (267-416)||(45398890-45399038)
chr3 (267-411)||(40023416-40023559)
chr3 (266-410)||(39021122-39021267)
chr3 (265-369)||(28937602-28937705)
chr3 (268-414)||(7104936-7105081)
chr3 (265-352)||(25647776-25647863)
chr3 (276-387)||(37123482-37123591)
chr3 (265-354)||(14755166-14755255)
chr3 (285-386)||(4170855-4170954)
chr3 (267-411)||(43012469-43012612)
chr3 (267-411)||(19176596-19176741)
chr3 (267-417)||(20611876-20612025)
chr3 (267-371)||(21342629-21342733)
chr3 (267-412)||(53247993-53248139)
chr3 (281-351)||(14194040-14194109)
chr3 (267-411)||(47235791-47235935)
chr3 (265-354)||(33143850-33143939)
chr3 (295-411)||(50518930-50519047)
chr3 (266-314)||(46358328-46358376)
chr3 (333-412)||(17551113-17551190)
chr3 (267-410)||(31482977-31483119)
chr3 (290-386)||(37999030-37999125)
[»] chr4 (17 HSPs)
chr4 (267-414)||(35341181-35341325)
chr4 (267-417)||(31050499-31050648)
chr4 (265-413)||(48098423-48098574)
chr4 (265-386)||(49528162-49528282)
chr4 (266-406)||(19815071-19815210)
chr4 (267-412)||(2825877-2826020)
chr4 (266-408)||(19673191-19673332)
chr4 (265-410)||(25753262-25753409)
chr4 (265-386)||(41117838-41117958)
chr4 (265-371)||(38637118-38637224)
chr4 (269-355)||(39420914-39421000)
chr4 (265-362)||(53823314-53823412)
chr4 (265-386)||(16832892-16833012)
chr4 (284-368)||(19311262-19311346)
chr4 (265-317)||(2061677-2061729)
chr4 (267-412)||(8255120-8255265)
chr4 (267-412)||(8268538-8268683)
[»] scaffold0063 (1 HSPs)
scaffold0063 (265-386)||(58217-58337)
[»] chr8 (15 HSPs)
chr8 (265-386)||(17656873-17656993)
chr8 (267-416)||(38577628-38577777)
chr8 (326-414)||(10248408-10248497)
chr8 (267-414)||(35816087-35816230)
chr8 (320-410)||(15821224-15821313)
chr8 (267-411)||(20138519-20138664)
chr8 (269-417)||(31207200-31207348)
chr8 (294-352)||(8862505-8862563)
chr8 (333-411)||(41893246-41893322)
chr8 (266-338)||(12197986-12198058)
chr8 (266-338)||(12442414-12442486)
chr8 (265-315)||(10248494-10248544)
chr8 (267-414)||(37986699-37986846)
chr8 (333-410)||(12898120-12898195)
chr8 (266-315)||(17720647-17720696)
[»] chr6 (7 HSPs)
chr6 (265-369)||(20701690-20701794)
chr6 (265-386)||(3880469-3880589)
chr6 (265-411)||(15120442-15120588)
chr6 (326-414)||(13423603-13423695)
chr6 (266-304)||(20500011-20500049)
chr6 (333-412)||(10541993-10542070)
chr6 (290-414)||(32935183-32935305)
[»] scaffold0050 (1 HSPs)
scaffold0050 (265-407)||(36799-36942)
[»] scaffold0200 (1 HSPs)
scaffold0200 (265-359)||(19473-19568)
[»] scaffold0119 (1 HSPs)
scaffold0119 (265-359)||(42034-42129)
[»] chr5 (18 HSPs)
chr5 (269-386)||(7195112-7195227)
chr5 (265-386)||(8297558-8297678)
chr5 (326-417)||(13954087-13954178)
chr5 (265-369)||(33258769-33258873)
chr5 (265-412)||(26045807-26045955)
chr5 (265-355)||(7391937-7392028)
chr5 (265-316)||(14302370-14302421)
chr5 (265-343)||(21402749-21402828)
chr5 (281-416)||(26405384-26405520)
chr5 (265-369)||(25992097-25992201)
chr5 (334-414)||(7161857-7161935)
chr5 (335-408)||(7391845-7391917)
chr5 (266-313)||(39024385-39024432)
chr5 (337-383)||(14302319-14302364)
chr5 (333-411)||(34378259-34378335)
chr5 (333-409)||(698522-698596)
chr5 (333-412)||(18593404-18593481)
chr5 (339-414)||(21398161-21398236)


Alignment Details
Target: chr1 (Bit Score: 155; Significance: 4e-82; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 158 - 414
Target Start/End: Original strand, 32882356 - 32882606
Alignment:
Q  158 ctataatgtactgattttcgatagatgtatgatttagtttggcttcaactaaatttcatgaaaaaatatattctctttctcctttttcaaatcattannn 257  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  32882356 ctatagtgtactgattttcgatagatgtatgatttagtttggcttcaactaaatttcatgaaaaaatatattctctttctcctttttcaaatcattattt 32882455  T
Q  258 nnnnggttttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgag 357  Q
        ||||||||||||||| || |||| |||| |||||||| ||||| ||||||||||| |  |||||||||||||||||||||||||||||||||||||    
T  32882456 ttttggttttctttcggtgaatcggagatcgacaggtggtgaaagcttaatgatctttcggtcaggagcttttcgaatgtggctcagctttggtgttgag 32882555  T
Q  358 gactgggagttttaattttgaggggtgttcgtt-ggtggtgagtagtgacgatgggtg 414  Q
    |||||||        |||||||||||||||||| || |||||||||||||||||||||    
T  32882556 gactggg-------gttttgaggggtgttcgttggggggtgagtagtgacgatgggtg 32882606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 71 - 254
Target Start/End: Original strand, 32879406 - 32879588
Alignment:
Q  71 actattaggtattcaaattcggatgaagatcttgttcctaacgagggaacaaaccaatgtatccgtagagcaaggcagtctatagttctataatgtactg 170  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||  |    ||||||||||||||    
T  32879406 actattaggtattcaaatttggatgaagatcttgttcctaatgagggaa-aaaccaatgtatccgtagagcaaggcagtagagctctctataatgtactg 32879504  T
Q  171 attttcgatagatgtatgatttagtttggcttcaactaaatttcatgaaaaaatatattctctttctcctttttcaaatcatta 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32879505 attttcgatagatgtatgatttagtttggcttcaactaaatttcatgaaaaaatatattctctttctcctttttcaaatcatta 32879588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 15 - 143
Target Start/End: Original strand, 32882155 - 32882282
Alignment:
Q  15 atgaataattcatctcatataaaaggtacaatgtctttgtaattacttaaaacacaactattaggtattcaaattcggatgaagatcttgttcctaacga 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  32882155 atgaataattcatctcatataaaaggtacaatgtctttgtaattacttgaaacacaactattaggtattcaaatttggatgaagatctcgttcctaacga 32882254  T
Q  115 gggaacaaaccaatgtatccgtagagcaa 143  Q
     |||||||||||||||| |||||||||||    
T  32882255 aggaacaaaccaatgta-ccgtagagcaa 32882282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 265 - 355
Target Start/End: Complemental strand, 6583207 - 6583117
Alignment:
Q  265 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttg 355  Q
    |||||||||||| || |||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||| ||||||||||||||||||    
T  6583207 tttctttcggtgaatcggaggtcgagaggtggtggaagctgattgatctttcagataggagcttttcggatgcggctcagctttggtgttg 6583117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 265 - 383
Target Start/End: Original strand, 27102281 - 27102398
Alignment:
Q  265 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 364  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||  |||||||||||||| ||||| |||| ||||    
T  27102281 tttctttcggtggatcggaggtcgagaggtggtggaagctgaatgatctttcagataggagcgtttcg-ttgtggctcagctttagtgttcaggaatggg 27102379  T
Q  365 agttttaattttgaggggt 383  Q
    | ||  | |||||||||||    
T  27102380 atttggatttttgaggggt 27102398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 267 - 409
Target Start/End: Complemental strand, 27031827 - 27031687
Alignment:
Q  267 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggag 366  Q
    ||||||||||||| |||||| ||||||| |||||||||| ||| || ||| | || |||||||||||||||||||||| || | |||||| | |||||||    
T  27031827 tctttcggtggatcggaggttgagaggttgtggaagctgcatgttcattcggttaagagcttttcgaatgtggctcagtttggatgttgaagtctgggag 27031728  T
Q  367 ttttaattttgaggggtgttcgttggtggtgagtagtgacgat 409  Q
    |||| ||||||||||||||||  ||| ||||||||||||||||    
T  27031727 tttt-attttgaggggtgttctctgg-ggtgagtagtgacgat 27031687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 265 - 354
Target Start/End: Complemental strand, 31291010 - 31290921
Alignment:
Q  265 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgtt 354  Q
    ||||||||||||||| |||||||||||||||||||||| ||  ||||||||| | ||||||||||||| |||||||||||||||||||||    
T  31291010 tttctttcggtggatcggaggtcgagaggtggtggaagttgcttgatctttcggataggagcttttcggatgtggctcagctttggtgtt 31290921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 267 - 414
Target Start/End: Original strand, 7857747 - 7857893
Alignment:
Q  267 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggag 366  Q
    ||||||||||||| || ||||||||||| ||||||||||  ||  | ||| | |||||||||||  |||||||||||| || |||||||| | |||||||    
T  7857747 tctttcggtggatcggtggtcgagaggttgtggaagctgcttgtccattcggttaggagcttttgaaatgtggctcagtttgggtgttgaagtctgggag 7857846  T
Q  367 ttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtg 414  Q
    |||| ||||||||||||||||  ||| ||||||||||| |||||||||    
T  7857847 tttt-attttgaggggtgttctatgggggtgagtagtggcgatgggtg 7857893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 267 - 414
Target Start/End: Original strand, 24659023 - 24659168
Alignment:
Q  267 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggag 366  Q
    ||||||||||||| |||||||||||||| ||||||||   ||| || ||| | ||| |||||||||||||||||||||| | || ||| ||  |||||||    
T  24659023 tctttcggtggatcggaggtcgagaggttgtggaagcatcatgttcattcggttagaagcttttcgaatgtggctcagcctgggagttaagt-ctgggag 24659121  T
Q  367 ttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtg 414  Q
    ||||| ||||||||||||||  |||| |||||||||||||||||||||    
T  24659122 tttta-ttttgaggggtgttatttgggggtgagtagtgacgatgggtg 24659168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 265 - 413
Target Start/End: Original strand, 34774961 - 34775110
Alignment:
Q  265 tttctttcggtggattggaggtcgagaggtggtggaagctgaatga-tctttcagctaggagctttt-cgaatgtggctcagctttggtgttgaggactg 362  Q
    |||||||||||| ||||||||| ||||||||||||||||||| ||| | |||||| |||||| |||| || |||||||||||||||||||||||||| ||    
T  34774961 tttctttcggtgaattggaggttgagaggtggtggaagctgattgattgtttcagataggagtttttccggatgtggctcagctttggtgttgaggattg 34775060  T
Q  363 ggagttttaattttgaggggtg-ttcgttggtggtgagtagtgacgatgggt 413  Q
    |||| |||| |||| | ||||| ||| |||| ||||||||||||||| ||||    
T  34775061 ggag-tttattttttacgggtgtttcattgg-ggtgagtagtgacgacgggt 34775110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 265 - 359
Target Start/End: Original strand, 16147648 - 16147742
Alignment:
Q  265 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgagga 359  Q
    ||||||||||| ||| |||||| ||||||||||| ||| ||||||||||||||| || |||||||||| |||||||||||||||||||| |||||    
T  16147648 tttctttcggtagatcggaggtggagaggtggtgaaagttgaatgatctttcagatatgagcttttcggatgtggctcagctttggtgtagagga 16147742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 266 - 352
Target Start/End: Original strand, 16577352 - 16577438
Alignment:
Q  266 ttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtg 352  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||||    ||||||||||||| |||||||||| ||||||||    
T  16577352 ttctttcggtagattggaggttgagaggtggtggaagctgaatgatctttggaataggagcttttcggatgtggctcaactttggtg 16577438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 269 - 369
Target Start/End: Complemental strand, 41126462 - 41126362
Alignment:
Q  269 tttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagtt 368  Q
    |||||||||||||||||| |||||||| ||||||||||| |||||||  | ||||||||||||  |||||| ||| |||||||| ||||||||| |||||    
T  41126462 tttcggtggattggaggttgagaggtgctggaagctgaacgatcttttggataggagcttttcagatgtggatcaactttggtgatgaggactgagagtt 41126363  T
Q  369 t 369  Q
    |    
T  41126362 t 41126362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 269 - 414
Target Start/End: Complemental strand, 10785447 - 10785301
Alignment:
Q  269 tttcggtggattggaggtcgagaggtggtggaagctgaatgatctt-tcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagt 367  Q
    ||||||||| | |||||||| |||||||||||||||||||||| || || | |||||||||||||  || ||||| |||||||| | |||||||| |||     
T  10785447 tttcggtggttcggaggtcgcgaggtggtggaagctgaatgattttctctgataggagcttttcgggtgcggctctgctttggtatcgaggactgagag- 10785349  T
Q  368 tttaattttgaggggtgttcgttg-gtggtgagtagtgacgatgggtg 414  Q
    |||| ||||||||||||||  ||| | | |||||||||||||||||||    
T  10785348 tttatttttgaggggtgtttcttgcgggatgagtagtgacgatgggtg 10785301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 265 - 386
Target Start/End: Complemental strand, 9313298 - 9313179
Alignment:
Q  265 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 364  Q
    ||||||||||||||| |||||| || ||||||||| || || |||||| ||||  || ||| |||||| |||||||||||||||||| || |||||||||    
T  9313298 tttctttcggtggatcggaggtggataggtggtggcagttgtatgatccttcaaatacgagtttttcggatgtggctcagctttggt-ttcaggactggg 9313200  T
Q  365 agttttaattttgaggggtgtt 386  Q
    || ||||||||||| |||||||    
T  9313199 ag-tttaattttgaagggtgtt 9313179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 267 - 411
Target Start/End: Complemental strand, 46814454 - 46814311
Alignment:
Q  267 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggag 366  Q
    ||||||||||||| ||| |||||||||| |  ||||||| | | || |||   ||||||||||||||||||||||| || | |||||||| |  ||||||    
T  46814454 tctttcggtggatcggatgtcgagaggttgcagaagctgcaagttcattcgattaggagcttttcgaatgtggctcggcgtgggtgttgaagtatgggag 46814355  T
Q  367 ttttaattttgaggggtgttcgttggtggtgagtagtgacgatgg 411  Q
    |||| |||| ||||||||||  |||| ||||||||||||||||||    
T  46814354 tttt-atttcgaggggtgttatttggaggtgagtagtgacgatgg 46814311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 301 - 381
Target Start/End: Original strand, 52278430 - 52278509
Alignment:
Q  301 agctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggg 381  Q
    ||||| |||||||||||| |||||| |||||| |||||||||| ||||| |||||||||||||||| ||||||||||||||    
T  52278430 agctgcatgatctttcagataggagtttttcggatgtggctcaactttgatgttgaggactgggag-tttaattttgaggg 52278509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 412
Target Start/End: Original strand, 5459289 - 5459399
Alignment:
Q  301 agctgaatgatctttcagctaggagcttttcgaa-tgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgag 399  Q
    ||||| |||||| ||||| |||| ||| || ||| ||||||||||||| ||||||| || |||| |||||| |||||||  ||||||| |||  ||||||    
T  5459289 agctgcatgatccttcagttaggtgctctttgaaatgtggctcagcttgggtgttggggtctggaagtttt-attttga-tggtgttctttgtgggtgag 5459386  T
Q  400 tagtgacgatggg 412  Q
    |||||||||||||    
T  5459387 tagtgacgatggg 5459399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 333 - 412
Target Start/End: Complemental strand, 46692739 - 46692662
Alignment:
Q  333 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatggg 412  Q
    ||||||||||||||| ||||||| || |||| |||||||  ||||  |||||||| |||  |||||||||||||||||||    
T  46692739 aatgtggctcagcttgggtgttggggtctggaagtttta--tttggagggtgttctttgtgggtgagtagtgacgatggg 46692662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 412
Target Start/End: Complemental strand, 5389340 - 5389265
Alignment:
Q  334 atgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatggg 412  Q
    |||||||||||||| ||||||| || ||||||||||| ||||||| |||||||| |||   ||||||||||||||||||    
T  5389340 atgtggctcagcttgggtgttggggtctgggagtttt-attttga-gggtgttc-ttgtaagtgagtagtgacgatggg 5389265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 9e-43; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 265 - 408
Target Start/End: Original strand, 8745243 - 8745388
Alignment:
Q  265 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 364  Q
    ||||||||||||||| |||||||||||||| |||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||| | |||||||    
T  8745243 tttctttcggtggatcggaggtcgagaggttgtggaagctgcatgatctttcagataggagcttttcggatgtggctcagctttggtgttcaagactggg 8745342  T
Q  365 agttttaattttgaggggtg---ttcgttggtggtgagtagtgacga 408  Q
    || |||||||||||||||||   ||| |||| |||||||||||||||    
T  8745343 ag-tttaattttgaggggtgtttttctttgggggtgagtagtgacga 8745388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 265 - 411
Target Start/End: Complemental strand, 24324788 - 24324640
Alignment:
Q  265 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 364  Q
    ||||||| ||||||| |||||||||| ||||||||||||||||||||||||| | |||||||||||||  |||||||||||||||||||| ||||| | |    
T  24324788 tttctttaggtggatcggaggtcgaggggtggtggaagctgaatgatctttcggttaggagcttttcggctgtggctcagctttggtgttcaggacggag 24324689  T
Q  365 agttttaattttgaggggtgtt---cgttggtggtgagtagtgacgatgg 411  Q
    ||||||| ||||||||||||||   | || | ||||||||||||||||||    
T  24324688 agtttta-ttttgaggggtgtttttctttaggggtgagtagtgacgatgg 24324640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 267 - 414
Target Start/End: Original strand, 34390056 - 34390202
Alignment:
Q  267 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggag 366  Q
    ||||||||||||| |||||||||||||| |||||||||| ||| || |||   |||||||||||| ||||||||||| ||| |||||||  | |||||||    
T  34390056 tctttcggtggatcggaggtcgagaggttgtggaagctgcatgttcattcgattaggagcttttcaaatgtggctcaacttgggtgttgtagtctgggag 34390155  T
Q  367 ttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtg 414  Q
    |||| |||||||||||||||| |||| | |||||||||||||||||||    
T  34390156 tttt-attttgaggggtgttctttggggatgagtagtgacgatgggtg 34390202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 266 - 408
Target Start/End: Original strand, 3478443 - 3478583
Alignment:
Q  266 ttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggga 365  Q
    |||||||||||||| |||| ||||||||||| ||||||||||||||||||| | |  || ||||||  |  ||||| |||||||||||||||||||||||    
T  3478443 ttctttcggtggatcggagatcgagaggtggcggaagctgaatgatctttcggatgtgaacttttctgagttggctaagctttggtgttgaggactggga 3478542  T
Q  366 gttttaattttgaggggtgttcgttggtggtgagtagtgacga 408  Q
    | ||||||||||||| |||||| |||| |||||||||||||||    
T  3478543 g-tttaattttgaggagtgttctttgg-ggtgagtagtgacga 3478583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 265 - 414
Target Start/End: Complemental strand, 6716727 - 6716578
Alignment:
Q  265 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatcttt-cagctaggagcttttcgaatgtggctcagctttggtgttgaggactgg 363  Q
    ||||||||||||||| | || ||||||||||||||||||||| |||||||| | | || ||  ||| || |||||||||||||||||||||||||| |||    
T  6716727 tttctttcggtggatcgaag-tcgagaggtggtggaagctgattgatcttttcggataagatttttccggatgtggctcagctttggtgttgaggaatgg 6716629  T
Q  364 gagttttaattttgaggggtg-ttcgttggtggtgagtagtgacgatgggtg 414  Q
    ||| |||||||||| |||||| |||||||| ||||||||||||| |||||||    
T  6716628 gag-tttaattttgtggggtgtttcgttgggggtgagtagtgacaatgggtg 6716578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 267 - 414
Target Start/End: Complemental strand, 35745813 - 35745663
Alignment:
Q  267 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcga-at---gtggctcagctttggtgttgaggactg 362  Q
    |||||||||||||||||||| ||||||| |||||||||| ||| || ||| | |||||||||||||| ||   |||||||||||| |||||||| | |||    
T  35745813 tctttcggtggattggaggtggagaggttgtggaagctgcatgttcattcggttaggagcttttcgatatatagtggctcagcttgggtgttgaagtctg 35745714  T
Q  363 ggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtg 414  Q
       ||||| |||||||| ||||||| |||| |||||||||||||||||||||    
T  35745713 actgtttt-attttgagaggtgttctttgggggtgagtagtgacgatgggtg 35745663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 267 - 420
Target Start/End: Complemental strand, 47325873 - 47325720
Alignment:
Q  267 tctttcggtggattggaggtcgagaggtg-gtggaagctgaatgatctttcagctaggagcttttcgaa-tgtggctcagctttggtgttgaggactggg 364  Q
    ||||||| ||||| |||||||| |||||  |||  |||||||||||| ||| | |||| ||| |||||| ||||||||||||| ||||||| || |||||    
T  47325873 tctttcgatggatcggaggtcgcgaggtttgtgatagctgaatgatccttcggttaggtgctcttcgaaatgtggctcagcttgggtgttggggtctggg 47325774  T
Q  365 agttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgatg 420  Q
    |||||| ||||||| |||||||| |||  ||||||||||||||||||| |||||||    
T  47325773 agtttt-attttga-gggtgttctttgtgggtgagtagtgacgatgggcgatgatg 47325720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 265 - 351
Target Start/End: Complemental strand, 42533244 - 42533158
Alignment:
Q  265 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggt 351  Q
    |||||||||||||||  ||||||| |||||||||| | ||||| |||||||||| || |||||||||| || ||| |||||||||||    
T  42533244 tttctttcggtggatcagaggtcgtgaggtggtggcaactgaacgatctttcagataagagcttttcggatatggatcagctttggt 42533158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 334 - 410
Target Start/End: Original strand, 6585043 - 6585118
Alignment:
Q  334 atgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatg 410  Q
    |||||||||||||| |||||||| | ||||||||||| ||||||||||||| |  |||| |||||||||||||||||    
T  6585043 atgtggctcagcttgggtgttgaagtctgggagtttt-attttgaggggtgctatttggaggtgagtagtgacgatg 6585118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 412
Target Start/End: Complemental strand, 5860276 - 5860131
Alignment:
Q  267 tctttcggtggattggaggtcgagaggtg-gtggaagctgaatgatctttcagctaggagcttttcgaa-tgtggctcagctttggtgttgaggactggg 364  Q
    ||||||||||| | |||||||| |||||  |||  ||||| |||||| ||||| |||| ||| |||||| ||||||||||||| ||||||| || |||||    
T  5860276 tctttcggtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcagttaggtgctcttcgaaatgtggctcagcttgggtgttggggtctggg 5860177  T
Q  365 agttttaattttgaggggtgttcgttggtggtgagtagtgacgatggg 412  Q
    |||||| ||||| | |||||||| |||  | |||||||||||||||||    
T  5860176 agtttt-attttca-gggtgttctttgtggatgagtagtgacgatggg 5860131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 267 - 411
Target Start/End: Complemental strand, 44353552 - 44353407
Alignment:
Q  267 tctttcggtggattggaggtcgagaggtg-gtggaagctgaatgatctttcagctaggagcttttcgaa-tgtggctcagctttggtgttgaggactggg 364  Q
    ||||||||||||| |||||||| |||||  |||  ||||| |||||| ||| | |||| ||| |||||| |||| | | |||| ||||||| || |||||    
T  44353552 tctttcggtggatcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgaaatgtgacccggcttgggtgttggggtctggg 44353453  T
Q  365 agttttaattttgaggggtgttcgttggtggtgagtagtgacgatgg 411  Q
    ||||||| |||||| |||||||| |||  ||||||||||||||||||    
T  44353452 agttttatttttga-gggtgttctttgtaggtgagtagtgacgatgg 44353407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 262 - 315
Target Start/End: Original strand, 36449171 - 36449224
Alignment:
Q  262 ggttttctttcggtggattggaggtcgagaggtggtggaagctgaatgatcttt 315  Q
    |||||||||||||||||| |||||| ||||||||||||||||  ||||||||||    
T  36449171 ggttttctttcggtggatcggaggttgagaggtggtggaagcataatgatcttt 36449224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 412
Target Start/End: Complemental strand, 31972054 - 31971977
Alignment:
Q  333 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatggg 412  Q
    ||||||||||||||| ||||||| || ||||||||||||  ||||  |||||||| |||  |||||||||||||||||||    
T  31972054 aatgtggctcagcttgggtgttggggtctgggagtttta--tttggagggtgttctttgtgggtgagtagtgacgatggg 31971977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 267 - 402
Target Start/End: Original strand, 33435203 - 33435337
Alignment:
Q  267 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaa-tgtggctcagctttggtgttgaggactggga 365  Q
    ||||||||||||| |||||||| ||||| ||| |||||  |||||| ||| |  ||| ||| |||||| ||||||||||||| | |||||||| ||| ||    
T  33435203 tctttcggtggatcggaggtcgcgaggttgtgaaagctacatgatccttcggtcaggtgctcttcgaattgtggctcagcttggttgttgaggtctgaga 33435302  T
Q  366 gttttaattttgaggggtgttcgttggtggtgagtag 402  Q
    |||||  |||||| |||||||| |||| |||||||||    
T  33435303 gtttt-cttttga-gggtgttctttgggggtgagtag 33435337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 414
Target Start/End: Original strand, 38306423 - 38306501
Alignment:
Q  334 atgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtg 414  Q
    |||||||||||||| ||||||| || ||| |||||||| ||||||||| ||||| |||  |||||||||||||||||||||    
T  38306423 atgtggctcagcttgggtgttggggtctgtgagtttta-ttttgaggg-tgttctttgtaggtgagtagtgacgatgggtg 38306501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 413
Target Start/End: Original strand, 23983298 - 23983444
Alignment:
Q  266 ttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggga 365  Q
    ||||||||||| || |||||| |||||||||||  || |||||||||||||   || |||||||||| || ||| ||||||||| || ||||||| | ||    
T  23983298 ttctttcggtgtatcggaggttgagaggtggtgacagttgaatgatctttcgaatatgagcttttcggatctggttcagctttgatgatgaggaccgaga 23983397  T
Q  366 gttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggt 413  Q
      ||| |||| ||| ||| ||| || | |||||||||||| |||||||    
T  23983398 -atttcatttagagcggtcttcttttggggtgagtagtgatgatgggt 23983444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 410
Target Start/End: Original strand, 1320885 - 1321030
Alignment:
Q  265 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 364  Q
    ||||||||||||||| ||||||||||||| ||||| | ||| ||||||  || | || || ||||||  |||||||||| ||||||| || | ||| |||    
T  1320885 tttctttcggtggatcggaggtcgagagggggtggcaactgtatgatccctcggataagatcttttcagatgtggctcaactttggt-ttcatgacaggg 1320983  T
Q  365 agttttaattttgaggggtgttcgtt--ggtggtgagtagtgacgatg 410  Q
    || |||| ||||||||||| ||  ||  || |||||||||||||||||    
T  1320984 ag-tttagttttgaggggtttttctttggggggtgagtagtgacgatg 1321030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 315
Target Start/End: Original strand, 44755679 - 44755729
Alignment:
Q  265 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatcttt 315  Q
    |||||||||||  ||  |||||||| |||||||||||||||||||||||||    
T  44755679 tttctttcggtatatcagaggtcgataggtggtggaagctgaatgatcttt 44755729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 411
Target Start/End: Original strand, 3867278 - 3867353
Alignment:
Q  334 atgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgg 411  Q
    |||||||||||||| |||||||  |  ||| ||||||| ||||||||| ||||| |||| ||||||||||||||||||    
T  3867278 atgtggctcagcttgggtgttggagtatggaagtttta-ttttgaggg-tgttctttgggggtgagtagtgacgatgg 3867353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 315
Target Start/End: Complemental strand, 48058644 - 48058595
Alignment:
Q  266 ttctttcggtggattggaggtcgagaggtggtggaagctgaatgatcttt 315  Q
    ||||||||||||  ||||||| | ||||||||||||||||| ||||||||    
T  48058644 ttctttcggtggtctggaggttgtgaggtggtggaagctgattgatcttt 48058595  T

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Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 311
Target Start/End: Complemental strand, 41089735 - 41089691
Alignment:
Q  267 tctttcggtggattggaggtcgagaggtggtggaagctgaatgat 311  Q
    ||||||||||||| |||||||| ||||| |||||||||| |||||    
T  41089735 tctttcggtggatcggaggtcgcgaggttgtggaagctgcatgat 41089691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 266 - 420
Target Start/End: Complemental strand, 16952372 - 16952219
Alignment:
Q  266 ttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggga 365  Q
    |||||||||||||| |||||| ||||||||||||||||| || |||||||| | ||||||||||||| |||||| ||| |||||||||||||||||||||    
T  16952372 ttctttcggtggatcggaggttgagaggtggtggaagctaaacgatctttcggataggagcttttcggatgtggatcaactttggtgttgaggactggga 16952273  T
Q  366 gttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgatg 420  Q
    | ||| |||| ||||||||||| |||| ||||||||||||||||| ||| |||||    
T  16952272 g-tttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggtgatg 16952219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 266 - 420
Target Start/End: Complemental strand, 17023037 - 17022884
Alignment:
Q  266 ttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggga 365  Q
    |||||||||||||| |||||| ||||||||||||||||| || |||||||| | ||||||||||||| |||||| ||| |||||||||||||||||||||    
T  17023037 ttctttcggtggatcggaggttgagaggtggtggaagctaaacgatctttcggataggagcttttcggatgtggatcaactttggtgttgaggactggga 17022938  T
Q  366 gttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgatg 420  Q
    | ||| |||| ||||||||||| |||| ||||||||||||||||| ||| |||||    
T  17022937 g-tttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggtgatg 17022884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 266 - 420
Target Start/End: Complemental strand, 17060343 - 17060190
Alignment:
Q  266 ttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggga 365  Q
    |||||||||||||| |||||| ||||||||||||||||| || |||||||| | ||||||||||||| |||||| ||| |||||||||||||||||||||    
T  17060343 ttctttcggtggatcggaggttgagaggtggtggaagctaaacgatctttcggataggagcttttcggatgtggatcaactttggtgttgaggactggga 17060244  T
Q  366 gttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgatg 420  Q
    | ||| |||| ||||||||||| |||| ||||||||||||||||| ||| |||||    
T  17060243 g-tttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggtgatg 17060190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 266 - 410
Target Start/End: Complemental strand, 10173567 - 10173425
Alignment:
Q  266 ttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggga 365  Q
    ||||||||||| || |||||||||||||||||||||| ||||||||||||    || |||||||||| ||||||||||||||||||||||||||||| ||    
T  10173567 ttctttcggtgaatcggaggtcgagaggtggtggaagttgaatgatcttttgaatatgagcttttcggatgtggctcagctttggtgttgaggactgaga 10173468  T
Q  366 gttttaattttgaggggtgttcgttggtggtgagtagtgacgatg 410  Q
    | ||||||||||||| || ||| |||| |||||||||||||||||    
T  10173467 g-tttaattttgaggagtattctttgg-ggtgagtagtgacgatg 10173425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 267 - 410
Target Start/End: Complemental strand, 14106509 - 14106367
Alignment:
Q  267 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggag 366  Q
    |||||||||||||  ||||||||||||| ||||||| || |||||| ||| | || ||||||| ||||||||||||||||| |||||||| | ||| |||    
T  14106509 tctttcggtggatcagaggtcgagaggttgtggaagttgtatgatcattcggttaagagctttacgaatgtggctcagcttgggtgttgaagtctgagag 14106410  T
Q  367 ttttaattttgaggggtgttcgttggtggtgagtagtgacgatg 410  Q
    |||| |||||||||||||||| |||| |||||||||||||||||    
T  14106409 tttt-attttgaggggtgttctttgggggtgagtagtgacgatg 14106367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 265 - 414
Target Start/End: Complemental strand, 37770633 - 37770482
Alignment:
Q  265 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 364  Q
    |||||||||||| || ||||||||||||||| |||||||||||||||||||||| || |||||||||  | ||||||| ||||||||||| ||| ||| |    
T  37770633 tttctttcggtgaatcggaggtcgagaggtgttggaagctgaatgatctttcagatatgagcttttctgaggtggctcggctttggtgttcaggtctgtg 37770534  T
Q  365 agttttaattttgagggg---tgttcgttggtggtgagtagtgacgatgggtg 414  Q
    || |||||||||||||||   | ||| |||| || |||||||||||| |||||    
T  37770533 ag-tttaattttgagggggttttttctttgggggcgagtagtgacgacgggtg 37770482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 269 - 414
Target Start/End: Original strand, 5254352 - 5254491
Alignment:
Q  269 tttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagtt 368  Q
    ||||||||||| |||||||||||||| |||||||||| ||| || ||| | | ||||||||||||||||||||||| || |||||||| | ||| |||||    
T  5254352 tttcggtggatcggaggtcgagaggttgtggaagctgcatgttcattcggtttggagcttttcgaatgtggctcagtttgggtgttgaagtctgagagtt 5254451  T
Q  369 ttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtg 414  Q
        ||||||||||||||| |||  |||||||||||||||||||||    
T  5254452 ----ttttgaggggtgttctttg--ggtgagtagtgacgatgggtg 5254491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 265 - 362
Target Start/End: Original strand, 34230291 - 34230388
Alignment:
Q  265 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactg 362  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||||||||  || |||||||||  |||||||||| |||||||||| |||||||    
T  34230291 tttctttcggtggatcggaggttgagaggtggtggaagctgaatgatctttcaaataagagcttttcagatgtggctcaactttggtgtttaggactg 34230388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 270 - 414
Target Start/End: Original strand, 7874388 - 7874530
Alignment:
Q  270 ttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttt 369  Q
    |||||||||| |||||||||||||| |||||| ||   || || ||  | |||||||||||||||||||||||||||| |||||||| | || |||||||    
T  7874388 ttcggtggatcggaggtcgagaggttgtggaaactacttgttcatttggttaggagcttttcgaatgtggctcagcttgggtgttgaagtcttggagttt 7874487  T
Q  370 taattttgaggggtgttcgttggtggtgagtagtgacgatgggtg 414  Q
    | |||||||||| ||||| |||| |||||||||||||||||||||    
T  7874488 t-attttgagggatgttctttgg-ggtgagtagtgacgatgggtg 7874530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 265 - 359
Target Start/End: Original strand, 1269573 - 1269668
Alignment:
Q  265 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatcttt-cagctaggagcttttcgaatgtggctcagctttggtgttgagga 359  Q
    |||||||| |||||| |||||||||||| ||||||||||||||| |||||| | | ||||||||||||||||||||||| ||||||||||||||||    
T  1269573 tttctttcagtggatcggaggtcgagagttggtggaagctgaataatcttttcggataggagcttttcgaatgtggctctgctttggtgttgagga 1269668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 265 - 386
Target Start/End: Original strand, 7696052 - 7696172
Alignment:
Q  265 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 364  Q
    ||||||||||||||| | |||||| ||||||||||||||||||||||||||| | |||||| |||  | |||||||||| |||||||||| |||||  ||    
T  7696052 tttctttcggtggatcgaaggtcgggaggtggtggaagctgaatgatctttcggataggagatttgaggatgtggctcaactttggtgttcaggaccagg 7696151  T
Q  365 agttttaattttgaggggtgtt 386  Q
    |||||| ||||| |||||||||    
T  7696152 agtttt-atttttaggggtgtt 7696172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 267 - 417
Target Start/End: Complemental strand, 39338853 - 39338703
Alignment:
Q  267 tctttcggtggattggaggtcgagaggtg-gtggaagctgaatgatctttcagctaggagcttttcgaat-gtggctcagctttggtgttgaggactggg 364  Q
    ||||||||||||| |||||||| |||||  |||  |||||||||||| ||| | |||| ||| ||||||| ||| |||||||| |||||||||| |||||    
T  39338853 tctttcggtggatcggaggtcgcgaggtttgtgatagctgaatgatccttcggttaggtgctcttcgaattgtgactcagcttgggtgttgaggtctggg 39338754  T
Q  365 agttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatg 417  Q
    |||||| ||||||| |||||||| |||  ||||||||||||||||||| ||||    
T  39338753 agtttt-attttga-gggtgttctttgtgggtgagtagtgacgatgggcgatg 39338703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 268 - 386
Target Start/End: Complemental strand, 41086785 - 41086667
Alignment:
Q  268 ctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtg-ttgaggactgggag 366  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| | || |||||||| | ||||| |||  |||||| | || |||| || |||    
T  41086785 ctttcggtggatcggaggtcgagaggtggtggaagctgaatgatctttcggataagagctttttggatgtgactctactttggagtttcaggattgcgag 41086686  T
Q  367 ttttaattttgaggggtgtt 386  Q
     ||| |||||||||||||||    
T  41086685 -tttgattttgaggggtgtt 41086667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 333 - 410
Target Start/End: Original strand, 7460836 - 7460912
Alignment:
Q  333 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatg 410  Q
    ||||||||||||||| |||||||| | ||||||||||| |||||||||||||||| |||| | |||||||||||||||    
T  7460836 aatgtggctcagcttgggtgttgaagtctgggagtttt-attttgaggggtgttctttggggttgagtagtgacgatg 7460912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 265 - 328
Target Start/End: Original strand, 13337364 - 13337427
Alignment:
Q  265 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagctt 328  Q
    ||||||||||||||| |||||||||||||||||| |  |||||||||||||||| |||||||||    
T  13337364 tttctttcggtggataggaggtcgagaggtggtgaacactgaatgatctttcagataggagctt 13337427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 267 - 412
Target Start/End: Original strand, 387268 - 387412
Alignment:
Q  267 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcga-atgtggctcagctttggtgttgaggactggga 365  Q
    ||||| ||||||| |||||||  |||||  ||||||||| ||| || |||||  ||| ||| ||||| | |||||||||||| ||||||| || ||||||    
T  387268 tcttttggtggatcggaggtcacgaggttttggaagctgcatgttcattcagtcaggtgctcttcgataggtggctcagcttgggtgttggggtctggga 387367  T
Q  366 gttttaattttgaggggtgttcgttggtggtgagtagtgacgatggg 412  Q
    ||||| ||||||| |||||||| |||| ||||| |||||||||||||    
T  387368 gtttt-attttga-gggtgttctttgggggtgaatagtgacgatggg 387412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 267 - 416
Target Start/End: Original strand, 14405292 - 14405441
Alignment:
Q  267 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggag 366  Q
    |||||||||||||  || |||||| ||| |||||| ||| | | || ||  | ||||||||| ||| |||||||||  ||| |||||||| | |||||||    
T  14405292 tctttcggtggatcagaagtcgagtggttgtggaaactgcacgttcatttggttaggagcttgtcgcatgtggctcgacttgggtgttgaagtctgggag 14405391  T
Q  367 ttttaattttgaggggtgttc-gttggtggtgagtagtgacgatgggtgat 416  Q
    |||| |||||||||| |||||  |||| ||||||||||||| |||||||||    
T  14405392 tttt-attttgagggatgttcttttgggggtgagtagtgacaatgggtgat 14405441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 333 - 412
Target Start/End: Complemental strand, 17116800 - 17116722
Alignment:
Q  333 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatggg 412  Q
    ||||||||||||||| ||||||| || ||| ||||||| ||||||| |||||||| |||  |||||||| ||||||||||    
T  17116800 aatgtggctcagcttgggtgttggggtctgagagtttttattttga-gggtgttctttgtgggtgagtaatgacgatggg 17116722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 412
Target Start/End: Original strand, 10524228 - 10524338
Alignment:
Q  301 agctgaatgatctttcagctaggagcttttcga-atgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgag 399  Q
    ||||| |||||| ||| | |||| ||| ||||| |||||||||||||| ||||||| ||  |||||||||||  ||||  |||||||| |||  ||||||    
T  10524228 agctgcatgatccttcggttaggtgctcttcgatatgtggctcagcttgggtgttggggtttgggagtttta--tttggagggtgttctttgtgggtgag 10524325  T
Q  400 tagtgacgatggg 412  Q
    |||||||||||||    
T  10524326 tagtgacgatggg 10524338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 347 - 410
Target Start/End: Original strand, 12342992 - 12343055
Alignment:
Q  347 ttggtgttgaggactgggagttttaattttgaggggtg-ttcgttggtggtgagtagtgacgatg 410  Q
    |||||||||||||||||||| |||| |||||||||||| ||| | || |||||||||||||||||    
T  12342992 ttggtgttgaggactgggag-tttatttttgaggggtgtttcttggggggtgagtagtgacgatg 12343055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 267 - 414
Target Start/End: Complemental strand, 23328337 - 23328191
Alignment:
Q  267 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggag 366  Q
    ||||||||||||| |||||||||||||| |||||||||   || || ||| | |||||||||||||||||||||||||||| |||||||| | |||||||    
T  23328337 tctttcggtggatcggaggtcgagaggttgtggaagctccttgttcattcggttaggagcttttcgaatgtggctcagcttgggtgttgaagtctgggag 23328238  T
Q  367 ttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtg 414  Q
    |||| |||||||| ||||||| |||| |||||||||||||||||||||    
T  23328237 tttt-attttgagtggtgttctttgggggtgagtagtgacgatgggtg 23328191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 265 - 386
Target Start/End: Original strand, 14879526 - 14879646
Alignment:
Q  265 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 364  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||| | ||||||||| | | |||||    
T  14879526 tttctttcggtggataggaggtcgagaggtggtggaagcttaatgatctttcagataggagcttttcggatgtggctcgggtttggtgttcaagtctggg 14879625  T
Q  365 agttttaattttgaggggtgtt 386  Q
    || |||||||||||||||||||    
T  14879626 ag-tttaattttgaggggtgtt 14879646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 267 - 416
Target Start/End: Original strand, 45398890 - 45399038
Alignment:
Q  267 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggag 366  Q
    ||||||| ||||| |||||||||||||| |||||||||| ||| || ||| | || |||||||||||||||||| || ||| |||||||| |  ||||||    
T  45398890 tctttcgatggatcggaggtcgagaggttgtggaagctgcatgttcattcggttatgagcttttcgaatgtggcgcaacttaggtgttgaagtttgggag 45398989  T
Q  367 ttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgat 416  Q
    || | |||||| |||||||||||||| |||||||||||||||||| ||||    
T  45398990 ttct-attttgtggggtgttcgttgggggtgagtagtgacgatggatgat 45399038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 267 - 411
Target Start/End: Complemental strand, 40023559 - 40023416
Alignment:
Q  267 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggag 366  Q
    |||||||||||||  |||| || ||||| |||||||||| ||| || ||| | |||||||||||||||||||||||||||  |||||||  | |||||||    
T  40023559 tctttcggtggatcagaggacgggaggttgtggaagctgcatgttcattcggttaggagcttttcgaatgtggctcagctagggtgttgtagtctgggag 40023460  T
Q  367 ttttaattttgaggggtgttcgttggtggtgagtagtgacgatgg 411  Q
    |||| ||||||||||| |||| || | | ||||||||||||||||    
T  40023459 tttt-attttgaggggcgttcttttgggatgagtagtgacgatgg 40023416  T

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Target: chr3; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 266 - 410
Target Start/End: Complemental strand, 39021267 - 39021122
Alignment:
Q  266 ttctttcggtggattggaggtcgagaggtggtggaagctgaatgatcttt-cagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 364  Q
    |||||| ||||||| |||||||||||| |||||| |||||| |||||||| | | || ||| |||||| |||||||| |||||||||||||||||||| |    
T  39021267 ttcttttggtggatcggaggtcgagagatggtggtagctgattgatcttttcggatatgagtttttcggatgtggcttagctttggtgttgaggactgag 39021168  T
Q  365 agttttaattttgaggggtg-ttcgttggtggtgagtagtgacgatg 410  Q
    || ||| ||||||| | ||| ||| ||||  ||||||||||||||||    
T  39021167 ag-tttcattttgacgcgtgtttctttgggtgtgagtagtgacgatg 39021122  T

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Target: chr3; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 265 - 369
Target Start/End: Complemental strand, 28937705 - 28937602
Alignment:
Q  265 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 364  Q
    ||||||||||||||| ||||||| |||| |||||||||||||||||| ||||||  |||||||||| | |||||||||| ||||| |||| ||| || ||    
T  28937705 tttctttcggtggatcggaggtcaagagatggtggaagctgaatgatgtttcagggaggagctttttggatgtggctca-ctttgatgttcaggtctagg 28937607  T
Q  365 agttt 369  Q
    |||||    
T  28937606 agttt 28937602  T

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Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 268 - 414
Target Start/End: Original strand, 7104936 - 7105081
Alignment:
Q  268 ctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcag-ctttggtgttgaggactgggag 366  Q
    |||| ||||||| | |||| |||||||||||||||||| |||||  ||| | || ||||||||||||| ||||||||  |||| ||||  ||||||||||    
T  7104936 cttttggtggatcgaaggttgagaggtggtggaagctgtatgatgcttc-gttatgagcttttcgaatatggctcagtttttgatgttagggactgggag 7105034  T
Q  367 ttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtg 414  Q
    |||| ||||| |||||||||  || | |||||||||||||||||||||    
T  7105035 tttt-attttaaggggtgtttctttggggtgagtagtgacgatgggtg 7105081  T

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Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 265 - 352
Target Start/End: Original strand, 25647776 - 25647863
Alignment:
Q  265 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtg 352  Q
    ||||||| ||||||| |||||||||||||||||| ||| ||||||||||||| | || |||||||||| | ||||||||| |||||||    
T  25647776 tttcttttggtggatcggaggtcgagaggtggtgaaagttgaatgatctttcggttatgagcttttcggacgtggctcagttttggtg 25647863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 276 - 387
Target Start/End: Original strand, 37123482 - 37123591
Alignment:
Q  276 ggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattt 375  Q
    |||| |||| |||| ||||||||||||||| ||||||||||||  | |||||||||| |||||||||||||||| ||||  |||||| ||| ||||||||    
T  37123482 ggatcggagttcgataggtggtggaagctgtatgatctttcagacatgagcttttcg-atgtggctcagctttgatgttctggactgagag-tttaattt 37123579  T
Q  376 tgaggggtgttc 387  Q
     |||||||||||    
T  37123580 ggaggggtgttc 37123591  T

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Target: chr3; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 265 - 354
Target Start/End: Complemental strand, 14755255 - 14755166
Alignment:
Q  265 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgtt 354  Q
    ||||||||| ||||| |||||||||||| ||||||||| ||||||||||||| |  | |||||| | | |||||||||||||||||||||    
T  14755255 tttctttcgatggatcggaggtcgagagatggtggaagttgaatgatctttcggggatgagcttgttggatgtggctcagctttggtgtt 14755166  T

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Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 285 - 386
Target Start/End: Original strand, 4170855 - 4170954
Alignment:
Q  285 gtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtg 384  Q
    |||| ||||||||||||||| ||||||||||  | ||||||||||    ||||||||||||||||||||| ||||||| ||||||| | |||||||||||    
T  4170855 gtcgggaggtggtggaagcttaatgatctttggg-taggagctttggagatgtggctcagctttggtgttaaggactgagagtttt-actttgaggggtg 4170952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 267 - 411
Target Start/End: Original strand, 43012469 - 43012612
Alignment:
Q  267 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaa-tgtggctcagctttggtgttgaggactggga 365  Q
    |||||||||| ||  ||||||| ||||| ||||||| || |||||| ||| |  ||| ||| |||||| ||||||||||||| ||||||| || || |||    
T  43012469 tctttcggtgaatcagaggtcgcgaggttgtggaagttgcatgatcgttcggtcaggtgctcttcgaaatgtggctcagcttgggtgttggggtctagga 43012568  T
Q  366 gttttaattttgaggggtgttcgttggtggtgagtagtgacgatgg 411  Q
    ||||||| ||||| |||||||| |||| ||||||||||| ||||||    
T  43012569 gttttaa-tttga-gggtgttctttggaggtgagtagtggcgatgg 43012612  T

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Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 267 - 411
Target Start/End: Original strand, 19176596 - 19176741
Alignment:
Q  267 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatc--tttcagctaggagcttttcg-aatgtggctcagctttggtgttgaggactgg 363  Q
    ||||| ||||||| ||||||||  |||| |||||||||| ||||||  |||| |  ||| ||| |||| ||||||||||||||| ||||| | || ||||    
T  19176596 tcttttggtggatcggaggtcgcaaggttgtggaagctgcatgatccttttcggtcaggtgctcttcgtaatgtggctcagcttgggtgtcggggtctgg 19176695  T
Q  364 gagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgg 411  Q
    | |||||| ||||||||| ||||| || | ||||||||||||||||||    
T  19176696 gtgtttta-ttttgaggg-tgttctttaggggtgagtagtgacgatgg 19176741  T

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Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 267 - 417
Target Start/End: Original strand, 20611876 - 20612025
Alignment:
Q  267 tctttcggtggattggaggtcgagaggtg-gtggaagctgaatgatctttcagctaggagcttttcgaa-tgtggctcagctttggtgttgaggactggg 364  Q
    ||||||||||||| |||||||| |||||  |||  |||||||||||| ||| | |||| ||| |||||| |||| |||||||| ||||||| || || ||    
T  20611876 tctttcggtggatcggaggtcgcgaggtttgtgatagctgaatgatccttcggttaggtgctcttcgaaatgtgactcagcttgggtgttg-ggtctagg 20611974  T
Q  365 agttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatg 417  Q
    ||||||| || |||||| ||||| |||  ||||||||||||||||||| ||||    
T  20611975 agtttta-ttctgaggg-tgttctttgtgggtgagtagtgacgatgggcgatg 20612025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 267 - 371
Target Start/End: Original strand, 21342629 - 21342733
Alignment:
Q  267 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggag 366  Q
    ||||||| |||||  ||||||||||||| ||||||||||  || || ||| | ||| |||||||||||||||||||  ||| |||||||| | ||| |||    
T  21342629 tctttcgatggatcagaggtcgagaggttgtggaagctgcttgttcattcggttagaagcttttcgaatgtggctcgacttgggtgttgaagtctgagag 21342728  T
Q  367 tttta 371  Q
    |||||    
T  21342729 tttta 21342733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 267 - 412
Target Start/End: Original strand, 53247993 - 53248139
Alignment:
Q  267 tctttcggtggattggaggtcgagaggtg-gtggaagctgaatgatctttcagctaggagcttttcgaa-tgtggctcagctttggtgttgaggactggg 364  Q
    |||||||||||||||||||||| |||||  |||  || || |||||| ||| | || | ||| |||||| |||||||||| || ||||||| || ||| |    
T  53247993 tctttcggtggattggaggtcgcgaggtttgtgatagttgtatgatccttcggttatgtgctcttcgaaatgtggctcagtttgggtgttggggtctgag 53248092  T
Q  365 agttttaattttgaggggtgttcgttggtggtgagtagtgacgatggg 412  Q
    |||||| ||||||| | |||||| |||  |||||||||||||||||||    
T  53248093 agtttttattttga-gagtgttctttgtgggtgagtagtgacgatggg 53248139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 351
Target Start/End: Original strand, 14194040 - 14194109
Alignment:
Q  281 ggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggt 351  Q
    ||||||||||||||| ||||||||||||  |||||| | ||||||||||||| | ||||||||| ||||||    
T  14194040 ggaggtcgagaggtg-tggaagctgaattgtctttcggttaggagcttttcggacgtggctcagttttggt 14194109  T

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Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 411
Target Start/End: Original strand, 47235791 - 47235935
Alignment:
Q  267 tctttcggtggattggaggtcgagaggtg-gtggaagctgaatgatctttcagctaggagcttttcgaa-tgtggctcagctttggtgttgaggactggg 364  Q
    |||||||||||||  ||||||| |||||  |||  ||||| |||||| ||| | |||| ||| |||||| ||||| ||||||| ||||||| || ||| |    
T  47235791 tctttcggtggatcagaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgaaatgtggttcagcttgggtgttggggtctgcg 47235890  T
Q  365 agttttaattttgaggggtgttcgttggtggtgagtagtgacgatgg 411  Q
    ||||||| ||||||||| ||||| |||  ||||||||||||||||||    
T  47235891 agtttta-ttttgaggg-tgttctttgtgggtgagtagtgacgatgg 47235935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 265 - 354
Target Start/End: Complemental strand, 33143939 - 33143850
Alignment:
Q  265 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgtt 354  Q
    |||||||||||||||  ||||||| ||||||||||||||||| |||||| | |  |||||| ||||    ||||| ||||||||||||||    
T  33143939 tttctttcggtggatcagaggtcgcgaggtggtggaagctgattgatctcttatataggagttttttcgttgtggatcagctttggtgtt 33143850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 411
Target Start/End: Complemental strand, 50519047 - 50518930
Alignment:
Q  295 ggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtg---ttcgttg 391  Q
    ||||||||||||||| |||||  | |||||| |||| || |||||||||||||||||||| |||||  |||  |||| |||| |||||||   ||| |||    
T  50519047 ggtggaagctgaatggtcttttggttaggagttttt-gattgtggctcagctttggtgttcaggacgagga-atttattttttaggggtgtttttctttg 50518950  T
Q  392 gtggtgagtagtgacgatgg 411  Q
    | ||||||||||||||||||    
T  50518949 gaggtgagtagtgacgatgg 50518930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 314
Target Start/End: Complemental strand, 46358376 - 46358328
Alignment:
Q  266 ttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctt 314  Q
    ||||||| ||||||||||||| ||||||||||||||||| | |||||||    
T  46358376 ttctttcagtggattggaggttgagaggtggtggaagcttattgatctt 46358328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 412
Target Start/End: Original strand, 17551113 - 17551190
Alignment:
Q  333 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatggg 412  Q
    |||||||||||| || ||||||| || ||| |||||||| ||||||||| ||||| |||  |||||||||||||||||||    
T  17551113 aatgtggctcagtttgggtgttggggtctgagagtttta-ttttgaggg-tgttctttgtcggtgagtagtgacgatggg 17551190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 410
Target Start/End: Original strand, 31482977 - 31483119
Alignment:
Q  267 tctttcggtggattggaggtcgagagg-tggtggaagctgaatgatctttcagctaggagcttttcg-aatgtggctcagctttggtgttgaggactggg 364  Q
    |||||||||||||||||||||| |||| | |||  ||||| |||||| ||| | |||| ||| |||| ||||||||||||||| ||||||| ||  || |    
T  31482977 tctttcggtggattggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgaaatgtggctcagcttaggtgttggggtttgag 31483076  T
Q  365 agttttaattttgaggggtgttcgttggtggtgagtagtgacgatg 410  Q
    |||||   |||| | |||||||| |||  ||| |||||||||||||    
T  31483077 agttt---tttttaagggtgttctttgtgggttagtagtgacgatg 31483119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 386
Target Start/End: Complemental strand, 37999125 - 37999030
Alignment:
Q  290 gaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgtt 386  Q
    ||||||||||||||| | ||||||||  | ||||||||||| | | |||| ||| |||||||||| ||||| ||||  ||||||||| | |||||||    
T  37999125 gaggtggtggaagctaattgatcttttggataggagctttttggaggtggatcaactttggtgtttaggac-gggaagtttaattttaatgggtgtt 37999030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 267 - 414
Target Start/End: Complemental strand, 35341325 - 35341181
Alignment:
Q  267 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggag 366  Q
    ||||||||||||| |||| ||||||||| |||||||||| ||| || ||||| || |||||||||||||||||||||| ||||||||||| |  ||||||    
T  35341325 tctttcggtggatcggagttcgagaggttgtggaagctgcatgttcattcagttatgagcttttcgaatgtggctcag-tttggtgttgaagtttgggag 35341227  T
Q  367 ttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtg 414  Q
    |||| ||||||||||||||||  ||| |||||||||||||||||||||    
T  35341226 tttt-attttgaggggtgttctctgg-ggtgagtagtgacgatgggtg 35341181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 267 - 417
Target Start/End: Complemental strand, 31050648 - 31050499
Alignment:
Q  267 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggag 366  Q
    |||||| |||||| |||||||||||||| |||||||||| ||| || ||| | |||||||||||||| ||||||| ||||| |||||||| | ||||  |    
T  31050648 tctttcagtggatcggaggtcgagaggttgtggaagctgcatgttcattcggttaggagcttttcgattgtggctaagcttgggtgttgaagtctggctg 31050549  T
Q  367 ttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatg 417  Q
    |||| |||||||||||||||| |||| |||||||||||||||||| |||||    
T  31050548 tttt-attttgaggggtgttccttgggggtgagtagtgacgatggatgatg 31050499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 265 - 413
Target Start/End: Original strand, 48098423 - 48098574
Alignment:
Q  265 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 364  Q
    ||||||||| ||||| | |||||||||||||||||||| |||| |||||||||| ||||||||||||| |||||||||| |||||||||| | |||||||    
T  48098423 tttctttcgatggatcgaaggtcgagaggtggtggaagatgaacgatctttcagataggagcttttcggatgtggctcaactttggtgtttaagactggg 48098522  T
Q  365 agttttaattttgaggggtg----ttcgttggtggtgagtagtgacgatgggt 413  Q
    || |||| |||| |||||||    ||| |||| ||||||||||||||| ||||    
T  48098523 ag-tttattttttaggggtgtattttctttgggggtgagtagtgacgacgggt 48098574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 265 - 386
Target Start/End: Original strand, 49528162 - 49528282
Alignment:
Q  265 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 364  Q
    ||||||||||||||| |||||||| ||||||||||||| ||||||||||||| | ||| |||||| || |||||| |||||||||||||| | ||||| |    
T  49528162 tttctttcggtggatcggaggtcgggaggtggtggaagatgaatgatctttcggatagaagctttgcggatgtggttcagctttggtgttcaagactgag 49528261  T
Q  365 agttttaattttgaggggtgtt 386  Q
    |||||| |||||||||||||||    
T  49528262 agtttt-attttgaggggtgtt 49528282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 266 - 406
Target Start/End: Complemental strand, 19815210 - 19815071
Alignment:
Q  266 ttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggga 365  Q
    |||||||||||||  |||||||||||| ||||||||||| ||||||||||| | ||||| ||||||  |||||||| | |||||||||||||||||| ||    
T  19815210 ttctttcggtggaccggaggtcgagagatggtggaagctaaatgatctttcggataggaacttttccgatgtggctaaactttggtgttgaggactgaga 19815111  T
Q  366 gttttaattttgaggggtgttcgttggtggtgagtagtgac 406  Q
    | |||||| |||||  |||||| |||| |||||||||||||    
T  19815110 g-tttaatcttgagaagtgttctttgggggtgagtagtgac 19815071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 267 - 412
Target Start/End: Original strand, 2825877 - 2826020
Alignment:
Q  267 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggag 366  Q
    ||||||||||||| ||||||| |||||| |||||||||| ||| || ||| | ||||||||||||||| |||| |||| || |||||||| |  ||||||    
T  2825877 tctttcggtggatcggaggtctagaggttgtggaagctgcatgttcattcggttaggagcttttcgaaggtggttcagtttgggtgttgaagtttgggag 2825976  T
Q  367 ttttaattttgaggggtgttcgttggtggtgagtagtgacgatggg 412  Q
    |||| ||||||||||||||||  ||| |||||||||||||||||||    
T  2825977 tttt-attttgaggggtgttctctgg-ggtgagtagtgacgatggg 2826020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 266 - 408
Target Start/End: Original strand, 19673191 - 19673332
Alignment:
Q  266 ttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggga 365  Q
    |||||||||||||| |  |||||| || ||||||||||| |||||| |||  | || || ||||||| |||||||| | |||||||||||||||||| ||    
T  19673191 ttctttcggtggatcgacggtcgatagatggtggaagctaaatgatattttggatatgaacttttcggatgtggctaaactttggtgttgaggactgaga 19673290  T
Q  366 gttttaattttgaggggtgttcgttggtggtgagtagtgacga 408  Q
    | ||||||||||||| |||||| |||| |||||||||||||||    
T  19673291 g-tttaattttgaggagtgttctttgggggtgagtagtgacga 19673332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 265 - 410
Target Start/End: Original strand, 25753262 - 25753409
Alignment:
Q  265 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 364  Q
    ||||||||||||||| ||||||||| |||  ||||||||||||||||||||| |  || ||||||| | |||||| ||| ||||| |||| |||||||      
T  25753262 tttctttcggtggatcggaggtcgataggcagtggaagctgaatgatctttcggagagaagctttttggatgtggttcaactttgatgttcaggactgaa 25753361  T
Q  365 agttttaattttgaggggtg---ttcgttggtggtgagtagtgacgatg 410  Q
    || |||||||||||||||||   ||| |||| |||||||||||||||||    
T  25753362 ag-tttaattttgaggggtgtttttctttgggggtgagtagtgacgatg 25753409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 265 - 386
Target Start/End: Complemental strand, 41117958 - 41117838
Alignment:
Q  265 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 364  Q
    ||||||||| |||||  |||||||||||||||||||||||||||||||||||   |||||||||| || | ||||||||| ||||||||| | ||  |||    
T  41117958 tttctttcgatggatcagaggtcgagaggtggtggaagctgaatgatctttcgaataggagctttgcggaggtggctcaggtttggtgttcatgatcggg 41117859  T
Q  365 agttttaattttgaggggtgtt 386  Q
    |||||| ||| |||||||||||    
T  41117858 agtttt-attctgaggggtgtt 41117838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 265 - 371
Target Start/End: Complemental strand, 38637224 - 38637118
Alignment:
Q  265 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 364  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||||||||||| || ||||||| |  | | || ||| |||||||||| | || ||||    
T  38637224 tttcttttggtggatcggaggtcgagaggtggtggaagctgaatgatctttcagataagagctttgccgaggcggttcaactttggtgttcaagattggg 38637125  T
Q  365 agtttta 371  Q
    |||||||    
T  38637124 agtttta 38637118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 269 - 355
Target Start/End: Complemental strand, 39421000 - 39420914
Alignment:
Q  269 tttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttg 355  Q
    ||||||||||| |||| |||||||||||||||| |||| |||| |||||| |||||||||||| ||||||||| ||||| |||||||    
T  39421000 tttcggtggatcggagatcgagaggtggtggaaactgattgatatttcagataggagcttttcaaatgtggcttagcttcggtgttg 39420914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 265 - 362
Target Start/End: Complemental strand, 53823412 - 53823314
Alignment:
Q  265 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagc-taggagcttttcgaatgtggctcagctttggtgttgaggactg 362  Q
    ||||||||||| ||| | |||||||||||||||||||| ||| ||||||||  |  ||||||||||| | |||||||||||||||||||||||||||||    
T  53823412 tttctttcggttgatcgaaggtcgagaggtggtggaagttgattgatctttttggataggagcttttaggatgtggctcagctttggtgttgaggactg 53823314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 265 - 386
Target Start/End: Complemental strand, 16833012 - 16832892
Alignment:
Q  265 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 364  Q
    |||||||| |||| | ||| ||| ||||||| | |||||||||||||||||  | || |||||||||| |||||||||| |||||||||| | ||||| |    
T  16833012 tttctttcagtggttcggaagtcaagaggtgattgaagctgaatgatctttgggatatgagcttttcggatgtggctcaactttggtgttcaagactgtg 16832913  T
Q  365 agttttaattttgaggggtgtt 386  Q
    || |||||||||||||||||||    
T  16832912 ag-tttaattttgaggggtgtt 16832892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 284 - 368
Target Start/End: Complemental strand, 19311346 - 19311262
Alignment:
Q  284 ggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagtt 368  Q
    |||||||||||||||||||||| |||||||||  | || |||||||| |||||||| || |||||||||||||||||| ||||||    
T  19311346 ggtcgagaggtggtggaagctgtatgatcttttggttaagagctttttgaatgtggttcggctttggtgttgaggactaggagtt 19311262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 265 - 317
Target Start/End: Complemental strand, 2061729 - 2061677
Alignment:
Q  265 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttca 317  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  2061729 tttctttcggtggatcggaggtcgagaggtggtggaagttgaatgatctttca 2061677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 267 - 412
Target Start/End: Original strand, 8255120 - 8255265
Alignment:
Q  267 tctttcggtggattggaggtcgagaggtg-gtggaagctgaatgatctttcagctaggagcttttcg-aatgtggctcagctttggtgttgaggactggg 364  Q
    ||||||||||||| |||||||| |||||  |||  |||||  |||||  |||| |||| ||| |||| ||||||||||||||| ||||||  || ||| |    
T  8255120 tctttcggtggatcggaggtcgcgaggtttgtgatagctgcttgatccatcagttaggtgctcttcgtaatgtggctcagcttgggtgttagggtctgtg 8255219  T
Q  365 agttttaattttgaggggtgttcgttggtggtgagtagtgacgatggg 412  Q
    ||||||| ||||||||| ||||| |||  |||||||||||||||||||    
T  8255220 agtttta-ttttgaggg-tgttctttgtgggtgagtagtgacgatggg 8255265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 267 - 412
Target Start/End: Original strand, 8268538 - 8268683
Alignment:
Q  267 tctttcggtggattggaggtcgagaggtg-gtggaagctgaatgatctttcagctaggagcttttcg-aatgtggctcagctttggtgttgaggactggg 364  Q
    ||||||||||||| |||||||| |||||  |||  |||||  |||||  |||| |||| ||| |||| ||||||||||||||| ||||||  || ||| |    
T  8268538 tctttcggtggatcggaggtcgcgaggtttgtgatagctgcttgatccatcagttaggtgctcttcgtaatgtggctcagcttgggtgttagggtctgtg 8268637  T
Q  365 agttttaattttgaggggtgttcgttggtggtgagtagtgacgatggg 412  Q
    ||||||| ||||||||| ||||| |||  |||||||||||||||||||    
T  8268638 agtttta-ttttgaggg-tgttctttgtgggtgagtagtgacgatggg 8268683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 265 - 386
Target Start/End: Original strand, 58217 - 58337
Alignment:
Q  265 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 364  Q
    ||||||||||||||| |||||||||||| || |||||||||||| ||||||| | || ||||||||||||||||||||||||||||||||  |||||| |    
T  58217 tttctttcggtggatcggaggtcgagagatgatggaagctgaattatctttcggataagagcttttcgaatgtggctcagctttggtgttcgggactgag 58316  T
Q  365 agttttaattttgaggggtgtt 386  Q
    || ||||||||||||| |||||    
T  58317 ag-tttaattttgaggagtgtt 58337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 265 - 386
Target Start/End: Complemental strand, 17656993 - 17656873
Alignment:
Q  265 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 364  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||||||||  ||||||||||||  | |||||||| |||||||||| | || ||||    
T  17656993 tttctttcggtggatcggaggtcgataggtggtggaagctgaatgatctttcatataggagcttttcagaggtggctcaactttggtgttcatgattggg 17656894  T
Q  365 agttttaattttgaggggtgtt 386  Q
    || |||||||||||||||||||    
T  17656893 ag-tttaattttgaggggtgtt 17656873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 267 - 416
Target Start/End: Complemental strand, 38577777 - 38577628
Alignment:
Q  267 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg-a 365  Q
    |||||||||||||  ||||||||||| | |||||||||| ||| || ||| | | |||||||||||||| |||| || ||| |||||||| | ||||| |    
T  38577777 tctttcggtggatcagaggtcgagagtttgtggaagctgcatgttcattcggtttggagcttttcgaatatggcgcaacttgggtgttgaagtctgggga 38577678  T
Q  366 gttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgat 416  Q
    |||||| ||||| || |||||| |||| | |||||||||||||||| ||||    
T  38577677 gtttta-ttttgtggagtgttctttggggatgagtagtgacgatggatgat 38577628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 326 - 414
Target Start/End: Complemental strand, 10248497 - 10248408
Alignment:
Q  326 cttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtg-ttcgtt-ggtggtgagtagtgacgatgggtg 414  Q
    ||||||| |||||||||| |||||||||||||||||  ||| ||||||||||| ||||| |||||| || |||||||||||||||||||||    
T  10248497 cttttcggatgtggctcaactttggtgttgaggacttagag-tttaattttgacgggtgtttcgttggggggtgagtagtgacgatgggtg 10248408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 267 - 414
Target Start/End: Complemental strand, 35816230 - 35816087
Alignment:
Q  267 tctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggag 366  Q
    ||||| ||||||| |||||| ||||| | |||||||||| ||| || ||| | || ||| |||||||||||||||||| || | |||||| | | | |||    
T  35816230 tcttttggtggatcggaggttgagagattgtggaagctgcatgttcattcggttaagagtttttcgaatgtggctcagtttggatgttgaagtcagagag 35816131  T
Q  367 ttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtg 414  Q
    ||    ||||||||||||||| |||| |||||||||||| ||||||||    
T  35816130 tt----ttttgaggggtgttctttgggggtgagtagtgatgatgggtg 35816087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 320 - 410
Target Start/End: Complemental strand, 15821313 - 15821224
Alignment:
Q  320 taggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatg 410  Q
    |||||||||||||||||||||||||||  | |||||| | ||||||||||| ||||||||| |||||| || |  |||||||||| |||||    
T  15821313 taggagcttttcgaatgtggctcagctcggatgttgaagtctgggagtttt-attttgaggagtgttcttttggagtgagtagtggcgatg 15821224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 267 - 411
Target Start/End: Original strand, 20138519 - 20138664
Alignment:
Q  267 tctttcggtggattggaggtcgagaggtg-gtggaagctgaatgatctttcagctaggagcttttcgaa-tgtggctcagctttggtgttgaggactggg 364  Q
    ||||||||||||| |||||||| |||||  |||  ||||| |||||| ||| | |||| ||| |||||| |||| | | |||| ||||||| || |||||    
T  20138519 tctttcggtggatcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgaaatgtgacccggcttgggtgttggggtctggg 20138618  T
Q  365 agttttaattttgaggggtgttcgttggtggtgagtagtgacgatgg 411  Q
    ||||||| |||||| |||||||| |||  ||||||||||||||||||    
T  20138619 agttttatttttga-gggtgttctttgtaggtgagtagtgacgatgg 20138664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 269 - 417
Target Start/End: Complemental strand, 31207348 - 31207200
Alignment:
Q  269 tttcggtggattggaggtcgagaggtg-gtggaagctgaatgatctttcagctaggagcttttcgaa-tgtggctcagctttggtgttgaggactgggag 366  Q
    ||||||||||| |||||||| |||||  |||  |||||||||| | ||| | |||| ||| |||||| ||||||||||||| |||||||  |  ||||||    
T  31207348 tttcggtggatcggaggtcgcgaggtttgtgatagctgaatgacccttcggttaggtgctcttcgaaatgtggctcagcttgggtgttggagtatgggag 31207249  T
Q  367 ttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatg 417  Q
    ||||| ||||||||| ||||| |||  ||||||||||||||||||| ||||    
T  31207248 tttta-ttttgaggg-tgttctttgtgggtgagtagtgacgatgggcgatg 31207200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 294 - 352
Target Start/End: Complemental strand, 8862563 - 8862505
Alignment:
Q  294 tggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtg 352  Q
    ||||||||||||||||||||||| | || || ||||||  |||||||||||||||||||    
T  8862563 tggtggaagctgaatgatctttcggatatgaacttttcagatgtggctcagctttggtg 8862505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 411
Target Start/End: Complemental strand, 41893322 - 41893246
Alignment:
Q  333 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgg 411  Q
    ||||||||||||||| |||||||||| ||||||||| | ||||| | |||||||| |||  ||||||||||||||||||    
T  41893322 aatgtggctcagcttgggtgttgaggtctgggagttct-attttca-gggtgttctttgtgggtgagtagtgacgatgg 41893246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 338
Target Start/End: Complemental strand, 12198058 - 12197986
Alignment:
Q  266 ttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtg 338  Q
    |||||||  ||||| ||||||||||||||| |||||| | ||||||||||| | || |||||||||| |||||    
T  12198058 ttctttcaatggatcggaggtcgagaggtgatggaagttcaatgatctttcggatatgagcttttcggatgtg 12197986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 338
Target Start/End: Complemental strand, 12442486 - 12442414
Alignment:
Q  266 ttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtg 338  Q
    |||||||  ||||| ||||||||||||||| |||||| | ||||||||||| | || |||||||||| |||||    
T  12442486 ttctttcaatggatcggaggtcgagaggtgatggaagttcaatgatctttcggatatgagcttttcggatgtg 12442414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 315
Target Start/End: Complemental strand, 10248544 - 10248494
Alignment:
Q  265 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatcttt 315  Q
    ||||||| ||||||| ||||| || ||||||||||||||||| ||||||||    
T  10248544 tttcttttggtggatcggaggccgcgaggtggtggaagctgattgatcttt 10248494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 414
Target Start/End: Complemental strand, 37986846 - 37986699
Alignment:
Q  267 tctttcggtggattggaggtcgagagg-tggtggaagctgaatgatctttcagctaggagcttttcg-aatgtggctcagctttggtgttgaggactggg 364  Q
    ||||||||||| | |||||||| |||| | |||  |||||  ||||| ||| | |||| ||| |||| ||||||||||||||| ||||||  || |||||    
T  37986846 tctttcggtggttcggaggtcgcgaggtttgtgatagctgcctgatccttcggttaggtgctcttcgaaatgtggctcagcttgggtgtttcggtctggg 37986747  T
Q  365 agttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtg 414  Q
    |||||||  ||||  |||||||| |||  |||||||| ||||||||||||    
T  37986746 agtttta--tttggagggtgttctttgtgggtgagtaatgacgatgggtg 37986699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 410
Target Start/End: Complemental strand, 12898195 - 12898120
Alignment:
Q  333 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatg 410  Q
    ||||||||||||||| ||||||| || ||  |||||||| ||||||||| ||||| |||  |||||||||||||||||    
T  12898195 aatgtggctcagcttgggtgttggggtcttagagtttta-ttttgaggg-tgttctttgtgggtgagtagtgacgatg 12898120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 315
Target Start/End: Complemental strand, 17720696 - 17720647
Alignment:
Q  266 ttctttcggtggattggaggtcgagaggtggtggaagctgaatgatcttt 315  Q
    ||||||||||||| | ||||| ||||||||||||||| ||| ||||||||    
T  17720696 ttctttcggtggacttgaggttgagaggtggtggaagttgattgatcttt 17720647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 8e-31; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 265 - 369
Target Start/End: Complemental strand, 20701794 - 20701690
Alignment:
Q  265 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 364  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||| ||||| |||| | |||| ||    
T  20701794 tttctttcggtggatcggaggtcgagaggtagtggaagctgaatgatctttcggataggagcttttcgaatgtggctcaactttgttgttcaagactagg 20701695  T
Q  365 agttt 369  Q
    |||||    
T  20701694 agttt 20701690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 265 - 386
Target Start/End: Complemental strand, 3880589 - 3880469
Alignment:
Q  265 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 364  Q
    |||||||| |||||| |||||||||| ||||||||||| ||||| ||||||| | || |||||||| | ||||||||||||||||||||| | |||| ||    
T  3880589 tttctttccgtggatcggaggtcgagtggtggtggaagttgaataatctttcggatatgagctttttggatgtggctcagctttggtgttcaagacttgg 3880490  T
Q  365 agttttaattttgaggggtgtt 386  Q
    || |||||||||||||||||||    
T  3880489 ag-tttaattttgaggggtgtt 3880469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 265 - 411
Target Start/End: Complemental strand, 15120588 - 15120442
Alignment:
Q  265 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatc-tttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgg 363  Q
    ||||||| ||||||| |||||||||||||||||||||||||  ||||| ||| || ||  || |||||| | ||||||   ||||||||||||||||||     
T  15120588 tttcttttggtggatcggaggtcgagaggtggtggaagctggttgatctttttagatattagattttcggacgtggctttactttggtgttgaggactgc 15120489  T
Q  364 gagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgg 411  Q
    | | ||||||||| |||| ||||  |||  ||||||||||||||||||    
T  15120488 g-ggtttaatttttagggatgtttcttgagggtgagtagtgacgatgg 15120442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 326 - 414
Target Start/End: Original strand, 13423603 - 13423695
Alignment:
Q  326 cttttcgaatgtggctcagctttggtgttgaggactgggagttttaattt---tgaggggtg-ttcgttggtggtgagtagtgacgatgggtg 414  Q
    ||||||| ||||||||||||||||||||||||||||  |||||| | |||   ||||||||| ||| |||| |||||||||||| ||||||||    
T  13423603 cttttcggatgtggctcagctttggtgttgaggacttagagtttaattttgactgaggggtgtttcattgggggtgagtagtgaagatgggtg 13423695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 304
Target Start/End: Original strand, 20500011 - 20500049
Alignment:
Q  266 ttctttcggtggattggaggtcgagaggtggtggaagct 304  Q
    |||||||| |||||||||||| |||||||||||||||||    
T  20500011 ttctttcgatggattggaggttgagaggtggtggaagct 20500049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 412
Target Start/End: Original strand, 10541993 - 10542070
Alignment:
Q  333 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatggg 412  Q
    ||||||||||||||| ||||||| || |||| |||||||  ||||  |||| ||| |||  |||||||||||||||||||    
T  10541993 aatgtggctcagcttgggtgttggggtctggaagtttta--tttggagggtattctttgtgggtgagtagtgacgatggg 10542070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 414
Target Start/End: Complemental strand, 32935305 - 32935183
Alignment:
Q  290 gaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgt 389  Q
    |||||||||||||||| ||||||||||    | ||| |||||| ||||  ||||||||||||| |||| |||| ||| ||| |||| ||||| ||||  |    
T  32935305 gaggtggtggaagctgcatgatctttcgaacatgagtttttcggatgtaactcagctttggtgatgagcactgtgag-tttcatttagagggatgttttt 32935207  T
Q  390 tggtggtgagtagtgacgatgggtg 414  Q
    ||| ||| |||||||| ||||||||    
T  32935206 tgg-ggtcagtagtgatgatgggtg 32935183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 265 - 407
Target Start/End: Original strand, 36799 - 36942
Alignment:
Q  265 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 364  Q
    ||||||||||||||| ||||||||||| |||||||||| |||||| |||||| | |||||||||||||| |||||||||||||||||||| ||||| |||    
T  36799 tttctttcggtggatcggaggtcgagatgtggtggaagttgaatggtctttcggttaggagcttttcgattgtggctcagctttggtgttcaggacgggg 36898  T
Q  365 agttttaattttgaggggtg---ttcgttggtggtgagtagtgacg 407  Q
     |  ||| |||| |||||||   ||| |||| ||||||||||||||    
T  36899 gg--ttattttttaggggtgtttttctttgggggtgagtagtgacg 36942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 265 - 359
Target Start/End: Original strand, 19473 - 19568
Alignment:
Q  265 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatc-tttcagctaggagcttttcgaatgtggctcagctttggtgttgagga 359  Q
    ||||||||||||||| |||||||||||| ||||||||||||||| ||| |||| |  |||||||||||||||||||||| ||||||||||||||||    
T  19473 tttctttcggtggatcggaggtcgagagttggtggaagctgaataatcttttcggacaggagcttttcgaatgtggctctgctttggtgttgagga 19568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 265 - 359
Target Start/End: Complemental strand, 42129 - 42034
Alignment:
Q  265 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatcttt-cagctaggagcttttcgaatgtggctcagctttggtgttgagga 359  Q
    |||||||| |||||| |||||||||||| ||||||||||||||| |||||| | | ||||||||||||||||||||||| ||||||||||||||||    
T  42129 tttctttcagtggatcggaggtcgagagttggtggaagctgaataatcttttcggataggagcttttcgaatgtggctctgctttggtgttgagga 42034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 269 - 386
Target Start/End: Complemental strand, 7195227 - 7195112
Alignment:
Q  269 tttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagtt 368  Q
    ||||||||||| |||||||||||||| ||||||||||||| ||||||  | |||||||||| || |||||||||||||||||| || |||||| ||||||    
T  7195227 tttcggtggatcggaggtcgagaggtcgtggaagctgaataatcttttggataggagctttgcggatgtggctcagctttggtattcaggact-ggagtt 7195129  T
Q  369 ttaattttgaggggtgtt 386  Q
    || |||||||||| ||||    
T  7195128 tt-attttgagggttgtt 7195112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 265 - 386
Target Start/End: Original strand, 8297558 - 8297678
Alignment:
Q  265 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 364  Q
    |||||||||||| || |||||||| ||||||||||||| |||||| |||||| | ||||||||||||| ||||||||| | ||||||||| | ||  |||    
T  8297558 tttctttcggtgaatcggaggtcgtgaggtggtggaagttgaatggtctttcggataggagcttttcggatgtggctcggttttggtgttcatgatgggg 8297657  T
Q  365 agttttaattttgaggggtgtt 386  Q
    || |||||||||||||||||||    
T  8297658 ag-tttaattttgaggggtgtt 8297678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 326 - 417
Target Start/End: Complemental strand, 13954178 - 13954087
Alignment:
Q  326 cttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtg-ttcgttggtggtgagtagtgacgatgggtgatg 417  Q
    ||||||| ||||||||||||||||| ||||||||||||||| |||||||| |||||||| |||||||| || |||| ||||||||||||||||    
T  13954178 cttttcggatgtggctcagctttggcgttgaggactgggag-tttaatttagaggggtgtttcgttgggggagagttgtgacgatgggtgatg 13954087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 265 - 369
Target Start/End: Complemental strand, 33258873 - 33258769
Alignment:
Q  265 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 364  Q
    ||||||||||||||| |||||||||||| | |||||||||||||||| | ||||  |||||||| | | ||||||||||||||||||||| ||| || ||    
T  33258873 tttctttcggtggatcggaggtcgagagatagtggaagctgaatgatttctcagggaggagcttgttggatgtggctcagctttggtgttcaggtctagg 33258774  T
Q  365 agttt 369  Q
    |||||    
T  33258773 agttt 33258769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 265 - 412
Target Start/End: Complemental strand, 26045955 - 26045807
Alignment:
Q  265 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 364  Q
    ||||| |||| |||| ||||||||  |||  ||||||||||| ||||||||||| || |||||||||| | ||| |||| |||||||||| |||| || |    
T  26045955 tttctctcgggggatcggaggtcgttaggctgtggaagctgattgatctttcagatatgagcttttcggaggtgactcaactttggtgtttaggattgag 26045856  T
Q  365 agttttaattttgaggggtgtt---cgttggtggtgagtagtgacgatggg 412  Q
    ||||| ||||||||||||||||   | |||| |||||||||||||||||||    
T  26045855 agttt-aattttgaggggtgtttttctttgg-ggtgagtagtgacgatggg 26045807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 265 - 355
Target Start/End: Complemental strand, 7392028 - 7391937
Alignment:
Q  265 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctt-tcagctaggagcttttcgaatgtggctcagctttggtgttg 355  Q
    ||||||||||||||| ||||||||||||||||| ||||| || ||||||| |  | ||||||||||||| ||||||||| ||||| ||||||    
T  7392028 tttctttcggtggatcggaggtcgagaggtggttgaagcggattgatcttattggataggagcttttcggatgtggctctgctttcgtgttg 7391937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 265 - 316
Target Start/End: Complemental strand, 14302421 - 14302370
Alignment:
Q  265 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttc 316  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  14302421 tttctttcggtggatcggaggtcgagaggtggtggaagctgcatgatctttc 14302370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 265 - 343
Target Start/End: Complemental strand, 21402828 - 21402749
Alignment:
Q  265 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatc-tttcagctaggagcttttcgaatgtggctca 343  Q
    |||||||||||||||||||||| ||||||||||||||| ||| ||||| |||| | |||||||||||| || ||||||||    
T  21402828 tttctttcggtggattggaggttgagaggtggtggaagttgattgatcttttcgggtaggagcttttcaaacgtggctca 21402749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 281 - 416
Target Start/End: Complemental strand, 26405520 - 26405384
Alignment:
Q  281 ggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgagg 380  Q
    |||| ||||||||||||||||||||| || |||||| | || |||||||||| | |||||||  |||||||||| |||||  |||| ||||||||||| |    
T  26405520 ggagatcgagaggtggtggaagctgattggtctttcggatatgagcttttcggaggtggctcgactttggtgttcaggacgaggag-tttaattttgatg 26405422  T
Q  381 ggtg--ttcgttggtggtgagtagtgacgatgggtgat 416  Q
     |||  ||  || | |||||||||||||||||||||||    
T  26405421 agtgtttttctttgaggtgagtagtgacgatgggtgat 26405384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 265 - 369
Target Start/End: Original strand, 25992097 - 25992201
Alignment:
Q  265 tttctttcggtggattggaggtcgagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg 364  Q
    ||||||||| ||||| |||||||| ||| || |||||||| ||||||||||| |  || ||||||| | | ||||||| ||||||||||| |||||| ||    
T  25992097 tttctttcgatggatcggaggtcgtgagatgttggaagcttaatgatctttcggggagaagctttttgtaggtggctctgctttggtgttcaggactagg 25992196  T
Q  365 agttt 369  Q
    |||||    
T  25992197 agttt 25992201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 334 - 414
Target Start/End: Complemental strand, 7161935 - 7161857
Alignment:
Q  334 atgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtg 414  Q
    ||||||||||||||  |||||| || |||||||||||| |||||| || ||||| |||| |||||||||||||| ||||||    
T  7161935 atgtggctcagcttgtgtgttggggtctgggagtttta-ttttgatgg-tgttctttgggggtgagtagtgacgttgggtg 7161857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 408
Target Start/End: Complemental strand, 7391917 - 7391845
Alignment:
Q  335 tgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgtt-cgttggtggtgagtagtgacga 408  Q
    |||||||| ||||| |||||||||| |||||| ||  ||||||||||||||| | |||| |||||||||||||||    
T  7391917 tgtggctctgctttcgtgttgaggaatgggagatt--attttgaggggtgtttctttgggggtgagtagtgacga 7391845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 313
Target Start/End: Complemental strand, 39024432 - 39024385
Alignment:
Q  266 ttctttcggtggattggaggtcgagaggtggtggaagctgaatgatct 313  Q
    |||||||||||||||||| || ||||||||||||||  ||||||||||    
T  39024432 ttctttcggtggattggaagttgagaggtggtggaacttgaatgatct 39024385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 383
Target Start/End: Complemental strand, 14302364 - 14302319
Alignment:
Q  337 tggctcagctttggtgttgaggactgggagttttaattttgaggggt 383  Q
    |||||||||||||||||| |||| |||||| ||||||||||||||||    
T  14302364 tggctcagctttggtgttcaggagtgggag-tttaattttgaggggt 14302319  T

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Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 411
Target Start/End: Original strand, 34378259 - 34378335
Alignment:
Q  333 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgg 411  Q
    ||||||||||||||| ||||||| ||  || |||||||| ||||||||| ||||| |||  ||||||||||||||||||    
T  34378259 aatgtggctcagcttgggtgttggggtttgagagtttta-ttttgaggg-tgttctttgtgggtgagtagtgacgatgg 34378335  T

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Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 409
Target Start/End: Original strand, 698522 - 698596
Alignment:
Q  333 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgat 409  Q
    ||||||||||||||| ||||||| || ||| ||||||||  ||||  |||||||| |||  ||||||||||||||||    
T  698522 aatgtggctcagcttgggtgttggggtctgagagtttta--tttggagggtgttctttgtgggtgagtagtgacgat 698596  T

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Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 412
Target Start/End: Original strand, 18593404 - 18593481
Alignment:
Q  333 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatggg 412  Q
    ||||||||||| ||| ||||||| || ||||||||||||  ||||  || ||||| |||  |||||||||||||||||||    
T  18593404 aatgtggctcaacttgggtgttggggtctgggagtttta--tttggaggatgttctttgtgggtgagtagtgacgatggg 18593481  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 414
Target Start/End: Complemental strand, 21398236 - 21398161
Alignment:
Q  339 gctcagctttggtgttgaggactgggagttttaattttgaggggtg-ttcgttggtggtgagtagtgacgatgggtg 414  Q
    ||||| ||||||||||||||||| |||| |||| ||| ||||| || |||||||| |||||||| ||| ||||||||    
T  21398236 gctcaactttggtgttgaggactaggag-tttattttagagggttgtttcgttgggggtgagtactgatgatgggtg 21398161  T

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