View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5557_low_9 (Length: 412)
Name: NF5557_low_9
Description: NF5557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5557_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 84 - 399
Target Start/End: Original strand, 27159626 - 27159940
Alignment:
| Q |
84 |
tatcgtaacactattttagataatctatattatactctaagcatgataatgataataaacaattaaagtaatggtcatggtcaatttctgcttgctaagg |
183 |
Q |
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| T |
27159626 |
tatcgtaacactattttagataatctaaattatattctaagcatgataatgataataaacaattaaagtaatggtcatggtcaatttctgcttgctaagg |
27159725 |
T |
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| Q |
184 |
tcatcgtttctctaatgctatacacatagaacgaaccatatatattttctttaggttccttcaactttctttcttttatcaccaaaaaacttgaaccaaa |
283 |
Q |
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| T |
27159726 |
tcatcgtttctctaatgctatacacatagaacgaacc-tatatattttctttaggttccttcaactttctttcttttatcaccaaaaaacttgaaccaaa |
27159824 |
T |
|
| Q |
284 |
atccacatgatcttttatttccatgcataacatcttttcttcttgaaaacgacttgctctttatgatttcatgttgaccactaagcaaaaagatagataa |
383 |
Q |
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| T |
27159825 |
atccacatgatcttttatttccatgcataacatcttttcttcttgaaaacgacttgctctttatgatttcatgttgaccactaagcaaaaagatagataa |
27159924 |
T |
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| Q |
384 |
agaggtgcttcttttt |
399 |
Q |
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| T |
27159925 |
agaggtgcttcttttt |
27159940 |
T |
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