View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5558-Insertion-1 (Length: 1100)
Name: NF5558-Insertion-1
Description: NF5558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5558-Insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 8 - 448
Target Start/End: Original strand, 1751899 - 1752339
Alignment:
| Q |
8 |
ctctttgtttcaaaagtctttctgtctatttagaaggtgtgttttgttgattgtcacaacaacggtacaagtacaaatgtacgtggatgaaagaaaaatt |
107 |
Q |
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| T |
1751899 |
ctctttgtttcgaaagtctttatgtcaatttagaaggtgtgttttgttgattgtcacaacaacggtacaagtacaaatgtacgtggatgaaagaaaaatt |
1751998 |
T |
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| Q |
108 |
gtttaatgaattaatggacttatacttgagatggaaattattgtatacattataattgagatatccacgaaacgaatgttttaagattttaggttaagga |
207 |
Q |
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| T |
1751999 |
gtttaatgaattaatggacttatacttgaggtggaaattattgtatacattataattgagatatccacgaaacgaatgtcttaaaattttaggttaagga |
1752098 |
T |
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| Q |
208 |
tatgatatacaactcatgacccaacaatttctaactatggtgagttattgagactcacttaaattttaaacttttgtttgggaaaagaataaaagaaaga |
307 |
Q |
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| T |
1752099 |
tatgatatacaactcatgacccaacaatttctaattatggtgagttattgacactcacttaaattttaaacttttgtttgggaaaagaataaaagaaaga |
1752198 |
T |
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| Q |
308 |
gtccaggttggctgcgtttcggctgcattattcaaagtctctctagattttaatattaggaattgtggcatttaacataggcaaatggtggccaagatat |
407 |
Q |
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| T |
1752199 |
gtccaggttggctgcgtttccgctgcattattcaaagtctctctagattttaatattaggaagtgtggcttttaacatagacaaatggtggccaagatac |
1752298 |
T |
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| Q |
408 |
atctaaataaagtggcaactacgccctctcccattattccc |
448 |
Q |
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| T |
1752299 |
atctaaataaagtggcaactacaccctctctcattattccc |
1752339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 517 - 753
Target Start/End: Original strand, 1752404 - 1752639
Alignment:
| Q |
517 |
ataatattggtaagatacatcaatttttcaataaatttaaaaaattagttttttacttgatatgaagatgtatattatccaccttttagtaacagtaaaa |
616 |
Q |
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| T |
1752404 |
ataatattggtaagatacatcaatttttcaataaatttaaaaaattatttttttacttgatatgaagatgtatattatccaccttttagtaacagtaaaa |
1752503 |
T |
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| Q |
617 |
tgttcaatggcacatgttatctacagccaacttgttcttccaacttgcaagtcatttatcagtattattattttttgacaaatagagttgctagtatatt |
716 |
Q |
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| T |
1752504 |
tgttcaatggcacatgttatctacagccaacttgttcttccaacttgcaagtcatttatcagtattattattttttgacaaatagagttgctagtat-tt |
1752602 |
T |
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| Q |
717 |
ttgggacagaagttacaagtactaccaaaaaaagacg |
753 |
Q |
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| T |
1752603 |
tttggacagaagttacaagtactaccaaaaaaagacg |
1752639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 769 - 831
Target Start/End: Original strand, 1752660 - 1752719
Alignment:
| Q |
769 |
gatcatgtgtagaacgtattttattaaaattagaaaagacactgggttataattataaagttg |
831 |
Q |
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| T |
1752660 |
gatcatgtgtaga-cgtattttattaaa-ttagaaaagacact-ggttataattataaagttg |
1752719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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