View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5558-Insertion-2 (Length: 1084)
Name: NF5558-Insertion-2
Description: NF5558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5558-Insertion-2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 431; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 480 - 1012
Target Start/End: Complemental strand, 33429317 - 33428788
Alignment:
| Q |
480 |
ttcaatcatgtgatgtggacaatgcatagtttacaacacaattggtttgcacgtcatgatttttattgtgactgtaaattattaatctgcagaagctgct |
579 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33429317 |
ttcaatcatgtgatgtggacaatgcatagtttacaacacaattggtttgcacttcatgatttttattgtgactgtaaattattaatctgcagaagctgct |
33429218 |
T |
|
| Q |
580 |
caatcttgcaaaactattttagacacagttgagtctgcattaccagaaggttggcccgaaaactttgtttcagattgtaaattacaagagatagtaacaa |
679 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33429217 |
caatcttgcaaaactattttagacacagttgagtctgcattaccagaaggttggcccgaaaactttgtttcagattgtaaattacaagagatagtaacaa |
33429118 |
T |
|
| Q |
680 |
attctgtagaactgcttccggagttatggaacctcgcaggctcacctcaagatgccatcgtatcatttaggaaagccttgctttatcattggaatcttga |
779 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33429117 |
attctgtagaactgcttccggagttatggaacctcgcaggctcacctcaagatgttatcttatcatttaggaaagccttgctttatcattggaatcttga |
33429018 |
T |
|
| Q |
780 |
cactgaatcaactgcaagaatacaaaaggaatttgctttgtttcttttgtacagcggctacgaagcggactctccttcgcttcgctctcagttgaacggt |
879 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33429017 |
cactgaatcaactgcaagaatacaaaaggaatttgctttgtttcttttgtacagcggctacgaagcggactctccttcgcttcgctctcaattgaacggt |
33428918 |
T |
|
| Q |
880 |
tcgtttgtgccaagaaacaacatagaag-agctgtttctttctacttctgattctgctggagaaattctaaagatccgctca--tattcatccacctttc |
976 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||| |||||| |||||| |||||||| |
|
|
| T |
33428917 |
tcgtttgtgccaagaaacaacatagaagaagctgtt--cttctacttctgattctgct-gagaaattctaaagat-cgctcaataattcat-cacctttc |
33428823 |
T |
|
| Q |
977 |
tttcgccgcttgagtgtttgtggtg-attcatgacac |
1012 |
Q |
| |
|
||||| ||| ||||||||||||||| ||||||||||| |
|
|
| T |
33428822 |
tttcg-cgc-tgagtgtttgtggtgaattcatgacac |
33428788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 8 - 469
Target Start/End: Complemental strand, 33429858 - 33429397
Alignment:
| Q |
8 |
taattaagtgtttttagctattttaattgtttttatgaagctagatgaacttttccttataggaagctagagccttgttaggaagacttgagtatcaaaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33429858 |
taattaagtgtttttagctattttaagtgtttttatgaagctagatgaacttttccttataggaagctagagccttgttaggaagacttgagtatcaaaa |
33429759 |
T |
|
| Q |
108 |
aggcaacactgaagctgcacttcatgtatttgaaggaatagatattgctgctgtcattccaaagatgaaaatgtctatatctagaaaatgtgaatccaat |
207 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33429758 |
aggcaacattgaagctgcacttcatgtatttgaaggaatagatattgctgctgtcattccaaagatgaaaatgtctatatctagaaaatgtgaatccaat |
33429659 |
T |
|
| Q |
208 |
aataaacgcagtccacaacgtgattcagtgccttctatgtcgatacatgctgttagtttacttcttgaagctgtttttctcaaggctaaatcattgcaaa |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
33429658 |
aataaacgcagtccacaacgtgattcagtgccttctatgtcgatacatgctgttagtttacttcttgaagctttttttctcaaggctaaatcattgcaaa |
33429559 |
T |
|
| Q |
308 |
ctcttggaaggtttcaaggtgcttttctatcttgtttcttagttcttaagtaactatatacgaaatcatcattttaattattttgctctttatcttcaaa |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
33429558 |
ctcttggaaggtttcaaggtgcttttctatcttgtttcttagttcttaagtaactatatacgaaatcatcatcttaattattttgcactttatcttcaac |
33429459 |
T |
|
| Q |
408 |
cgttgtagcgtgcatagtaccaacacttatattcaattagttctatttttcaaattattact |
469 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
33429458 |
cgttgtaacgtgcatagtaccaacacttatattcaactacttctatttttcaaattattact |
33429397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University