View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5558-Insertion-3 (Length: 915)
Name: NF5558-Insertion-3
Description: NF5558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5558-Insertion-3 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 671; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 671; E-Value: 0
Query Start/End: Original strand, 8 - 915
Target Start/End: Original strand, 7233654 - 7234569
Alignment:
| Q |
8 |
aaatgcatattgtagatcacaactaaannnnnnnaatatattgaacacctggatttctttagttcaaagttcaattaccactcaggtctaatataatgcg |
107 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7233654 |
aaatgcatattgtagatcacaactaaatttttttaatatattgaacacctgaatttccttagttcaaagttcaattaccactcaggtctaatataatgcg |
7233753 |
T |
|
| Q |
108 |
caatctatatgaatgttgtaaatcttaatatatcaaactcgatttctactaataaagaaatcgaagttcattttttgttttggattcaacaaatctacaa |
207 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7233754 |
caatctatattaatgttgtaaatcttaatatatcaaactcgatttctactaataaagaaatcgaagttcattttttgttttggattcaacaaatctacaa |
7233853 |
T |
|
| Q |
208 |
gagttgagtaagtctatgcatattaattgtaagggttta-gtctaatagtaaacatacaagttatggatctggacgttctagatttaagccttactatag |
306 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |||||||| |||| |||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
7233854 |
gagttgagtaagtttatgcatattaattgtaagggtttaggtctaataataaatatacaagttatggatccggaggttctagatttaagccttactatag |
7233953 |
T |
|
| Q |
307 |
tgtccttggaggggaaaagtatcaacggttttacaagtgtttttgagctctaaaaccttttctattttagacccgaaatttttattattnnnnnnnctga |
406 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
7233954 |
tgtccttggaggggaaaagtatcaactgttttacaagtgtttttgagctctaaaaccttttctattttagacccaaaatttttattattaaaaaaactga |
7234053 |
T |
|
| Q |
407 |
tgcatattccataatttcactaaatgtagtttaagaaatgtatttctctctgtacgat-nnnnnnntgatatgacatgtaagtacaattcatatcggagt |
505 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
7234054 |
tgcatattccataatttcactaaatgtagtttaagaaatgtatttctttccgtacgataaaaaaaatgatatgacatgtaagtacaattcatattggagt |
7234153 |
T |
|
| Q |
506 |
atgcgggctctccatttcttaacacttaatatgtgtgaatctttacttaattgaatacagaccggacgtattagaatatgaagcaaacaataaaccaatg |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
7234154 |
atgcgggctctccatttcttaacacttaatgtgtgtgaatctttacttaattgaatacagaccgcatgtattagaatatgaagcaaacaataaaccaatg |
7234253 |
T |
|
| Q |
606 |
attatactaccaaaagaggttgaaattttggtcaaata---tcttagtgactagagctcacatattataaacgtagagaaatgaagtgtccggaatttga |
702 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||| |||| || |
|
|
| T |
7234254 |
attatactaccaaaagaggttgagattttggtcaaatatcttcttagtaactagagctcacatattataaatgtagagaaatgaagtgtccgaaattcga |
7234353 |
T |
|
| Q |
703 |
accacgacatctgcatatatgc-aaaaagggttgaatttttcaatacgcagtgaattcaaattcaaattttaactcat-aaaatattcatatttagtttc |
800 |
Q |
| |
|
||| | |||||||||||||||| ||||| ||||||||||||||||||| | |||||||||||||||| ||| |||||| |||| ||||||||||| |||| |
|
|
| T |
7234354 |
accccaacatctgcatatatgcaaaaaatggttgaatttttcaatacgaaatgaattcaaattcaaaatttgactcataaaaacattcatatttaatttc |
7234453 |
T |
|
| Q |
801 |
caacgtatgtcaaattaggattaccaaatgcagaggaaatccat-aaaacatgaacaagaaaaatgatgacgacactacccctggtggaattggagggtt |
899 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7234454 |
caacatatgtcaaattaggattaccaaatgtagaggaaatccataaaaacatgaacaagaaaaatgatgacgacactacccctggtggaattggagggtt |
7234553 |
T |
|
| Q |
900 |
gcgaaagttatttcat |
915 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
7234554 |
gcgaaagttatttcat |
7234569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 647 - 721
Target Start/End: Original strand, 8827855 - 8827929
Alignment:
| Q |
647 |
tagtgactagagctcacatattataaacgtagagaaatgaagtgtccggaatttgaaccacgacatctgcatata |
721 |
Q |
| |
|
|||||||||||||||||| | | || || |||||||||||||||||| ||| ||||| |||| |||||||||| |
|
|
| T |
8827855 |
tagtgactagagctcacacaattaaattgtggagaaatgaagtgtccgggattcgaaccccgacctctgcatata |
8827929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University