View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5558-Insertion-4 (Length: 915)
Name: NF5558-Insertion-4
Description: NF5558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5558-Insertion-4 |
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Alignment Details
Target: chr1 (Bit Score: 496; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 167 - 709
Target Start/End: Original strand, 10334201 - 10334740
Alignment:
| Q |
167 |
catgtttagttgcagaatgcaatcccctatgcccctaatccccaaaaatggtgttgaattcacaaaagaaacaccggggaatgtctaattggttctacaa |
266 |
Q |
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| T |
10334201 |
catgtttagttgcagaatgcaatcccctatgcccctaatccccaaaaatggtgttgaattcacaaaagaaacaccagggaatgtctaattggttctacaa |
10334300 |
T |
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| Q |
267 |
actatcgcaagcttgttccataattgtctcatcctcaaataataggtggaggcatagacaacaattatgccaaaagttttgccatttttagctattgtaa |
366 |
Q |
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| T |
10334301 |
actatc--aagcttgttccataattgtctcatcctcaaataataggtggaggcatagacaacaattatgccaaaagttttgccatttttagctattgtaa |
10334398 |
T |
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| Q |
367 |
aataaacaaattgatcctctatatgtggcaacaatagcaggattaatatcatttgcacaaagacgccataaatttggcagcaaattcactctcttattca |
466 |
Q |
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| T |
10334399 |
aataaacaaattgatcctctatctgtggcaacgatagcaggattaatatcatttgcacaaagacgccataaatttagcagcaaattcactctcttattca |
10334498 |
T |
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| Q |
467 |
aaggtaaacaatttgaaagctattctacttaaccaatttctataagtttctgctattctgtaaaaattcatccatgtttctgcatttaagcatgtatcgc |
566 |
Q |
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| T |
10334499 |
a-ggtaaacaatttgaaagctattctactcaaccaatttctataagtttctgctattctataaaaattcatccatgtttctgcatttaagcatgtatcgc |
10334597 |
T |
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| Q |
567 |
gattatactcatctacaagtctcttgagagccaatcttgacggggcattgaccaagccccgcacatcccaaaataggcacttcatctaaaaggtttaaca |
666 |
Q |
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| T |
10334598 |
gattatactcatctacaagtctcttgagagccaatcttgacggggcattgaccaagccccgcacatcccaaaataggcacttcatctaaaaggtttaaca |
10334697 |
T |
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| Q |
667 |
ttaataacctttgtcattgtttcatatttcttgcttattggtg |
709 |
Q |
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| T |
10334698 |
ttaataacctttgttattgtttcatatttcttgcttattggtg |
10334740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 8 - 121
Target Start/End: Complemental strand, 10333965 - 10333852
Alignment:
| Q |
8 |
gatatttagatgaataaagaaaaagtaactcaaatagagctagatgccgctcttgaaagggaatagagcacaacaaaattgataacctccctaaaaagtg |
107 |
Q |
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| T |
10333965 |
gatatttagatgaatcaagaaaaagtagctcaaatagagctagatgcagctcttgaaagagaatagagcacaacaaaattgataacctccctaaaaagtg |
10333866 |
T |
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| Q |
108 |
ttgatgaagttctc |
121 |
Q |
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| T |
10333865 |
ctgatgaacttctc |
10333852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 729 - 771
Target Start/End: Original strand, 10334762 - 10334803
Alignment:
| Q |
729 |
gactcttcttcatggcctttgaagaaatcccaaaatagccaat |
771 |
Q |
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| T |
10334762 |
gactcttcttcatggc-tttgaagaaatcccaaaatagccaat |
10334803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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