View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5558-Insertion-5 (Length: 576)

Name: NF5558-Insertion-5
Description: NF5558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5558-Insertion-5
NF5558-Insertion-5
[»] chr2 (13 HSPs)
chr2 (169-576)||(8374832-8375244)
chr2 (169-388)||(8439859-8440083)
chr2 (182-341)||(8417911-8418062)
chr2 (409-576)||(8440070-8440230)
chr2 (13-127)||(8375298-8375412)
chr2 (7-89)||(8394785-8394867)
chr2 (7-89)||(8395028-8395110)
chr2 (7-89)||(8406462-8406544)
chr2 (7-89)||(8412582-8412664)
chr2 (7-89)||(8434680-8434762)
chr2 (13-127)||(8439691-8439805)
chr2 (13-86)||(8417809-8417882)
chr2 (7-80)||(8431610-8431680)


Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 169 - 576
Target Start/End: Complemental strand, 8375244 - 8374832
Alignment:
Q  169 tgatctatggttacattaaattcctcaaccagttttcttgtttttgataattgtggaattgataaattagacaaacttggtagttttggaagatggatag 268  Q
    |||||| ||| | |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8375244 tgatctttggatccattaaattcctcaattagttttcttgtttttgataattgtggaattgataaattagacaaacttggtagttttggaagatggatag 8375145  T
Q  269 cagcattaactgtcctcaatgaacataaattagctgctgctgagatttgtaaacaaaccatgtattg-----atgagaattgagagctgaaaaaatttgt 363  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||| |||||||||||    
T  8375144 cagcattaactgtcctcaaagaacataaattagctgctgctgagatttgtaaacaaaccatgtattgtattgatgagaattgagagcttaaaaaatttgt 8375045  T
Q  364 gtatgaattgtagatgagagtttattgttttannnnnnngataaaagatgagtgtttatgaaaacaatgaatgggagtgagtggtatatatatagacaga 463  Q
    ||||||||||||||||||||||||||||||||       ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8375044 gtatgaattgtagatgagagtttattgttttatttttttgataaaagatgagagtttatgaaaacaatgaatgggagtgagtggtatatatatagacaga 8374945  T
Q  464 ggaatgaaatggatcaaaattagaatagatgggaagaagtcatgagcaaccgtaacattagattagacttggcctttttattgactttctatgtattctc 563  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8374944 ggaatgaaatggatcaaaattagaatagatgggaagaagtcatgagcaaccgtaacattagattagacttggcctttttattgactttctatgtattctc 8374845  T
Q  564 taattaataaatt 576  Q
    |||||||||||||    
T  8374844 taattaataaatt 8374832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 169 - 388
Target Start/End: Original strand, 8439859 - 8440083
Alignment:
Q  169 tgatctatggttacattaaattcctcaaccagttttcttgtttttgataattgtggaattgataaattagacaaacttggtagttttggaagatggatag 268  Q
    |||||| ||| | |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8439859 tgatctttggatccattaaattcctcaattagttttcttgtttttgataattgtggaattgataaattagacaaacttggtagttttggaagatggatag 8439958  T
Q  269 cagcattaactgtcctcaatgaacataaattagctgctgctgagatttgtaaacaaacca-----tgtattgatgagaattgagagctgaaaaaatttgt 363  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||| |||||||||||    
T  8439959 cagcattaactgtcctcaaagaacataaattagctgctgctgagatttgtaaacaaaccatgtattgtattgatgagaattgagagcttaaaaaatttgt 8440058  T
Q  364 gtatgaattgtagatgagagtttat 388  Q
    |||||||||||||||||||||||||    
T  8440059 gtatgaattgtagatgagagtttat 8440083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 182 - 341
Target Start/End: Original strand, 8417911 - 8418062
Alignment:
Q  182 cattaaattcctcaaccagttttcttgtttttgataattgtggaattgataaattagacaaacttggtagttttggaagatggatagcagcattaactgt 281  Q
    |||||||||||||||  |||| |||||||||||||||||| |        ||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  8417911 cattaaattcctcaattagttgtcttgtttttgataattgag--------aaattagacaaacttgggagttttggaagatggataacagcattaactgt 8418002  T
Q  282 cctcaatgaacataaattagctgctgctgagatttgtaaacaaaccatgtattgatgaga 341  Q
    |||||| ||| ||||||||||||||||||||| ||||| || ||||||||||||||||||    
T  8418003 cctcaaagaagataaattagctgctgctgagaattgtatactaaccatgtattgatgaga 8418062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 409 - 576
Target Start/End: Original strand, 8440070 - 8440230
Alignment:
Q  409 agatgagtgtttatgaaaacaatgaatgggagtgagtggtatatatatagacagaggaatgaaatggatcaaaattagaatagatgggaagaagtcatga 508  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||| || ||||   |||||||||||| ||||||||||||||||||||||  |    
T  8440070 agatgagagtttatgaaaacaatgaatgggagtgggtggtatatatatagatag-ggaagagaatggatcaaaactagaatagatgggaagaagtcacaa 8440168  T
Q  509 gcaaccgtaacattagattagacttggcctttttattgac-tttctatgtattctctaattaataaatt 576  Q
      |||||||     |||||||||||||||||||||||||| |||||||||||  |||||||||||||||    
T  8440169 ctaaccgta-----agattagacttggcctttttattgacttttctatgtat--tctaattaataaatt 8440230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 13 - 127
Target Start/End: Complemental strand, 8375412 - 8375298
Alignment:
Q  13 ttccagttgttacgttgttcgccaatgttgtgatgcatttcaactctgtcagaaacagcttccaaaacagcatagagcttaataatttcatttgacttct 112  Q
    ||||| |||||||| |||||||||||||| ||||||||||||||||| |||||||| |||||||| |  ||||| |  ||||||||  ||||||||||||    
T  8375412 ttccaattgttacgctgttcgccaatgttttgatgcatttcaactctatcagaaactgcttccaagattgcatataatttaataatagcatttgacttct 8375313  T
Q  113 tattgttgtgtctgt 127  Q
    ||||||| |||||||    
T  8375312 tattgttttgtctgt 8375298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 7 - 89
Target Start/End: Complemental strand, 8394867 - 8394785
Alignment:
Q  7 agattattccagttgttacgttgttcgccaatgttgtgatgcatttcaactctgtcagaaacagcttccaaaacagcatagag 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | |||||| || ||||||||||| || ||||||||    
T  8394867 agattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagag 8394785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 7 - 89
Target Start/End: Complemental strand, 8395110 - 8395028
Alignment:
Q  7 agattattccagttgttacgttgttcgccaatgttgtgatgcatttcaactctgtcagaaacagcttccaaaacagcatagag 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | |||||| || ||||||||||| || ||||||||    
T  8395110 agattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagag 8395028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 7 - 89
Target Start/End: Original strand, 8406462 - 8406544
Alignment:
Q  7 agattattccagttgttacgttgttcgccaatgttgtgatgcatttcaactctgtcagaaacagcttccaaaacagcatagag 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | |||||| || ||||||||||| || ||||||||    
T  8406462 agattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagag 8406544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 7 - 89
Target Start/End: Original strand, 8412582 - 8412664
Alignment:
Q  7 agattattccagttgttacgttgttcgccaatgttgtgatgcatttcaactctgtcagaaacagcttccaaaacagcatagag 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | |||||| || ||||||||||| || ||||||||    
T  8412582 agattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagag 8412664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 7 - 89
Target Start/End: Original strand, 8434680 - 8434762
Alignment:
Q  7 agattattccagttgttacgttgttcgccaatgttgtgatgcatttcaactctgtcagaaacagcttccaaaacagcatagag 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | |||||| || ||||||||||| || ||||||||    
T  8434680 agattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagag 8434762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 13 - 127
Target Start/End: Original strand, 8439691 - 8439805
Alignment:
Q  13 ttccagttgttacgttgttcgccaatgttgtgatgcatttcaactctgtcagaaacagcttccaaaacagcatagagcttaataatttcatttgacttct 112  Q
    ||||| ||| |||| |||||||||||||| ||||||||||||||||| |||||||| |||||||| |  ||||| |  ||||||||  ||||||||||||    
T  8439691 ttccaattgctacgctgttcgccaatgttttgatgcatttcaactctatcagaaactgcttccaagattgcatataatttaataatagcatttgacttct 8439790  T
Q  113 tattgttgtgtctgt 127  Q
    ||||||| |||||||    
T  8439791 tattgttttgtctgt 8439805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 86
Target Start/End: Original strand, 8417809 - 8417882
Alignment:
Q  13 ttccagttgttacgttgttcgccaatgttgtgatgcatttcaactctgtcagaaacagcttccaaaacagcata 86  Q
    ||||| ||||||||| |||| | |||||||||||||||||||| ||||||||||||| ||||||| || |||||    
T  8417809 ttccaattgttacgtagttcacaaatgttgtgatgcatttcaattctgtcagaaacaacttccaagactgcata 8417882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 80
Target Start/End: Original strand, 8431610 - 8431680
Alignment:
Q  7 agattattccagttgttacgttgttcgccaatgttgtgatgcatttcaactctgtcagaaacagcttccaaaac 80  Q
    ||||||||||||||||||||||   |||||||||||||||||||||| | |||||| || |||||||| |||||    
T  8431610 agattattccagttgttacgtt---cgccaatgttgtgatgcatttctattctgtctgatacagcttctaaaac 8431680  T

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