View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5558-Insertion-7 (Length: 475)
Name: NF5558-Insertion-7
Description: NF5558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5558-Insertion-7 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 229 - 475
Target Start/End: Complemental strand, 32724693 - 32724448
Alignment:
| Q |
229 |
gatggatgatttcccgatttccgccatggtagtcgtgttattgcacggaagtggaagttgaactatttctgaaattaatttaaaaaacaaatagaaggaa |
328 |
Q |
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| T |
32724693 |
gatggatgatttcccgatttccgccatggtagtcgtgttattgcacggaagtggaagtcgaactatttctgaaattaatttaaaaaacagatagaaggaa |
32724594 |
T |
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| Q |
329 |
tgaacgtagtggtgaaagtaaatgttgtatcattaatattattcatgaaagaattctgaaagaaaaagatattaaaattaaaatttagaaacatacttgg |
428 |
Q |
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| T |
32724593 |
tgaacgtagtggtgaaagtaaatgttgtatcatgaatattattcatgaaagaattttgaaag-aaacgatattaaaattaaaatttagaaacatacttgg |
32724495 |
T |
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| Q |
429 |
caatgattttttcctcttctgtaagtgatttcacttttttcaattaa |
475 |
Q |
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| T |
32724494 |
caatgattttttcctcttctgtaagtgatttcacttttttcaattaa |
32724448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 8 - 168
Target Start/End: Complemental strand, 32724914 - 32724754
Alignment:
| Q |
8 |
ataagaaccatacttttttctctgaaccgtgaaatgctgagaaagaatcttttaacatccactaccttcaacccctttctaaaaagcccgttaacccaaa |
107 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||| |
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| T |
32724914 |
ataagaaccatacttttttctctgaaccatgaaatgctgagaaagaatcttttaacatccattaccttcaacacctttctaaaaagcctgttaacccaaa |
32724815 |
T |
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| Q |
108 |
taacttgtgtcaccattgatacaaaacaaaaattactctttctctaataaacatgtaaacc |
168 |
Q |
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| T |
32724814 |
taacttatgtcaccattgatacaaaacaaaaattactctttctctaataaacatgtaaacc |
32724754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 343 - 468
Target Start/End: Complemental strand, 4001937 - 4001811
Alignment:
| Q |
343 |
aaagtaaatgttgtatcattaatattattcatgaaagaattctgaaagaaaaagatattaaaattaaaatttagaaacatacttggcaatg-attttttc |
441 |
Q |
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| T |
4001937 |
aaagtaaatgttgtattatgaatattattcatgaatgaattttgaaagagaaagatattaaaattaaaatttagaaacatacttggcattgtcttctttc |
4001838 |
T |
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| Q |
442 |
ctcttctgtaagtgatttcactttttt |
468 |
Q |
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| T |
4001837 |
ctcttatgtaagtgatttcactttttt |
4001811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 16 - 168
Target Start/End: Complemental strand, 32723453 - 32723299
Alignment:
| Q |
16 |
catacttttttctctgaaccgtgaaatgctgagaaagaatcttttaacatccactaccttcaacccctttctaaaaagcccgt--taacccaaataactt |
113 |
Q |
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| T |
32723453 |
catactttttcatctgaaccatgaaatgctgataaagaatcttgtaacatccactaccttcaacacctttctcaaaaacatgttataactcaaataactt |
32723354 |
T |
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| Q |
114 |
gtgtcaccattgatacaaaacaaaaattactctttctctaataaacatgtaaacc |
168 |
Q |
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| T |
32723353 |
gtgtcaccattaatataaaacaaaaattactgtttctctactaaacctgtaaacc |
32723299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 8 - 139
Target Start/End: Complemental strand, 4002073 - 4001942
Alignment:
| Q |
8 |
ataagaaccatacttttttctctgaaccgtgaaatgctgagaaagaatcttttaacatccactaccttcaacccctttctaaaaagcccgttaacccaaa |
107 |
Q |
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||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||| |||||| |||| | ||||||||||| |
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| T |
4002073 |
ataagaaccatacttttttctctaaaccatgaaattatgagaaagaatcttttaacatccactaccttcaacatctttctcaaaaacatgttaacccaaa |
4001974 |
T |
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| Q |
108 |
taacttgtgtcaccattgatacaaaacaaaaa |
139 |
Q |
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| T |
4001973 |
taacttgcgttaccattgataaaaaaaaaaaa |
4001942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 16 - 164
Target Start/End: Complemental strand, 15720179 - 15720028
Alignment:
| Q |
16 |
catacttttttctctgaaccgtgaaatgctgagaaagaatcttttaacatccactaccttcaacccctttctaaaaagcccgt--taacccaaataactt |
113 |
Q |
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|||||||||| |||||||| |||||| ||||||||||||||| |||||||||||||||||||| ||||||| |||| | || ||||||||||||||| |
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| T |
15720179 |
catactttttcatctgaaccatgaaatactgagaaagaatcttgtaacatccactaccttcaacacctttctcaaaaacttgttataacccaaataactt |
15720080 |
T |
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| Q |
114 |
gtgtcaccattgatacaaaac-aaaaattactctttctctaataaacatgta |
164 |
Q |
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| T |
15720079 |
gtgtcaccattaatacaaaacaaaaaattactctttctctactaaacctgta |
15720028 |
T |
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