View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5558_high_1 (Length: 645)

Name: NF5558_high_1
Description: NF5558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5558_high_1
NF5558_high_1
[»] chr8 (2 HSPs)
chr8 (19-641)||(26137220-26137837)
chr8 (383-460)||(16852382-16852459)
[»] chr4 (2 HSPs)
chr4 (373-460)||(37274406-37274493)
chr4 (383-460)||(23377998-23378075)
[»] chr2 (1 HSPs)
chr2 (422-467)||(7599977-7600022)
[»] chr1 (3 HSPs)
chr1 (383-459)||(24019066-24019142)
chr1 (377-461)||(7219869-7219953)
chr1 (440-468)||(21392871-21392899)
[»] chr5 (1 HSPs)
chr5 (423-468)||(18437119-18437164)
[»] chr6 (1 HSPs)
chr6 (384-460)||(24641148-24641224)
[»] chr3 (1 HSPs)
chr3 (373-473)||(8075074-8075174)


Alignment Details
Target: chr8 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 19 - 641
Target Start/End: Complemental strand, 26137837 - 26137220
Alignment:
Q  19 cgtggtaacctaatatgaccaaatggaccacggtccgatgagaaaataaaataaattaataaatagaaatggaacacatagaatcaatgcaaaca--gtt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  26137837 cgtggtaacctaatatgaccaaatggaccacggtccgatgagaaaataaaataaattaataaatagaaatggaacacatagaatcaatgcaaacaaagtt 26137738  T
Q  117 ttaactgaaaaaatgttgaacattggtgtcaagacatgaaaaccatgaactctatgtcaatcaatgtttcacaccaccaactaacaaatgagattatcag 216  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26137737 ttaactgaaaaaatgttgaacattggtgt-aagacatgaaaaccatgaactctatgtcaatcaatgtttcacaccaccaactaacaaatgagattatcag 26137639  T
Q  217 tccctnnnnnnnnnntgagattatcaaattaagtggaaannnnnnnnngtttcaaccaaaattagaaataactaaaatactaaa-gaagacgaaacaaag 315  Q
    |||||          ||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||| || || |||||||||    
T  26137638 tccctaaaaaaaa--tgagattatcaaattaagtggaaaaaaaaatt-gtttcaaccaaaattagaaataactaaaatactaaaagaggatgaaacaaag 26137542  T
Q  316 tatccaaaaaatttcaccctcttcaaaacttgtcaaccacaatggaatcttttaatattttttattatttt-gaaaaagctaaactagcccgcctaaatt 414  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||| ||| ||||||||    
T  26137541 tatccaaaaaatttcaccctcttaaaaacttgtcaaccacaatggaatcttttaatattttttattttttttgaagaagctaaactaacccacctaaatt 26137442  T
Q  415 agtagtaaagagaatcgaacacaaaaccttgaggaggagcacactcttaagtccaaagcttaccgaaccaacccaagtgggtttttcaatacattcaaat 514  Q
     |  |||  ||||||||||| ||| || ||||||| |||||||||| |||||||||||| |||| |||||| ||||||||||||||||||||||||||||    
T  26137441 ggcggta--gagaatcgaacccaagactttgaggaagagcacactcctaagtccaaagcctaccaaaccaaaccaagtgggtttttcaatacattcaaat 26137344  T
Q  515 tcactttcaatagaattattccccattccttccttactgttcatcatcgggactattcttttgttccatatttgattatattaaagcataaaaggaataa 614  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||  || |||| |    
T  26137343 tcactttcaatagaattattccccattccttccttactgttcatcattgggactattcttttgttccatatttgattgtattaaagcat--aatgaat-a 26137247  T
Q  615 aaaagaattttaggatttcatctctct 641  Q
    ||||||||||||||||||||| |||||    
T  26137246 aaaagaattttaggatttcatttctct 26137220  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 460
Target Start/End: Complemental strand, 16852459 - 16852382
Alignment:
Q  383 ttttgaaaaagctaaactagcccgcctaaattagtagtaaagagaatcgaacacaaaaccttgaggaggagcacactc 460  Q
    ||||||| |||||||| |||||| |||||||| | | ||| |||||||||||   | |||| ||||||||||||||||    
T  16852459 ttttgaagaagctaaaatagcccacctaaattggcactaaggagaatcgaacctgagacctcgaggaggagcacactc 16852382  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 373 - 460
Target Start/End: Original strand, 37274406 - 37274493
Alignment:
Q  373 ttttttattattttgaaaaagctaaactagcccgcctaaattagtagtaaagagaatcgaacacaaaaccttgaggaggagcacactc 460  Q
    |||||| || ||||||| |||||||| |||||| | |||||||| |  | ||||||||||||  || |||||||||||||||||||||    
T  37274406 ttttttttttttttgaagaagctaaattagcccacttaaattagcaccagagagaatcgaacctaagaccttgaggaggagcacactc 37274493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 460
Target Start/End: Complemental strand, 23378075 - 23377998
Alignment:
Q  383 ttttgaaaaagctaaactagcccgcctaaattagtagtaaagagaatcgaacacaaaaccttgaggaggagcacactc 460  Q
    ||||||| ||||||||||||||| |  ||||| | | || ||||||||||||   | |||||||||||||||||||||    
T  23378075 ttttgaagaagctaaactagccccctcaaattggcactagagagaatcgaacctgagaccttgaggaggagcacactc 23377998  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 422 - 467
Target Start/End: Original strand, 7599977 - 7600022
Alignment:
Q  422 aagagaatcgaacacaaaaccttgaggaggagcacactcttaagtc 467  Q
    ||||||||||||||  |||||| |||||||||||||||||||||||    
T  7599977 aagagaatcgaacatgaaacctcgaggaggagcacactcttaagtc 7600022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 383 - 459
Target Start/End: Complemental strand, 24019142 - 24019066
Alignment:
Q  383 ttttgaaaaagctaaactagcccgcctaaattagtagtaaagagaatcgaacacaaaaccttgaggaggagcacact 459  Q
    ||||||| ||||||||||||||| || ||||| |||   | |||||||||||  || ||||||||||||||||||||    
T  24019142 ttttgaagaagctaaactagcccaccgaaattggtaccgaggagaatcgaacctaagaccttgaggaggagcacact 24019066  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 377 - 461
Target Start/End: Original strand, 7219869 - 7219953
Alignment:
Q  377 ttattattttgaaaaagctaaactagcccgcctaaattagtagtaaagagaatcgaacacaaaaccttgaggaggagcacactct 461  Q
    ||||| ||||||| |||||||| ||| || |||||||| |||  ||||||||||||||   | || | |||||||||||||||||    
T  7219869 ttattcttttgaagaagctaaattagtccacctaaattggtatcaaagagaatcgaacctgagacttcgaggaggagcacactct 7219953  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 440 - 468
Target Start/End: Complemental strand, 21392899 - 21392871
Alignment:
Q  440 accttgaggaggagcacactcttaagtcc 468  Q
    |||||||||||||||||||||||||||||    
T  21392899 accttgaggaggagcacactcttaagtcc 21392871  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 468
Target Start/End: Complemental strand, 18437164 - 18437119
Alignment:
Q  423 agagaatcgaacacaaaaccttgaggaggagcacactcttaagtcc 468  Q
    |||||||||||| | |||| ||||||||||||||||||| ||||||    
T  18437164 agagaatcgaacccgaaactttgaggaggagcacactctcaagtcc 18437119  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 384 - 460
Target Start/End: Original strand, 24641148 - 24641224
Alignment:
Q  384 tttgaaaaagctaaactagcccgcctaaattagtagtaaagagaatcgaacacaaaaccttgaggaggagcacactc 460  Q
    |||||| ||| |||| |||||| |||||||| | ||| | |||||||||||   |||||| ||||||||||||||||    
T  24641148 tttgaagaagttaaattagcccacctaaattggcagtgaggagaatcgaaccttaaacctcgaggaggagcacactc 24641224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 373 - 473
Target Start/End: Original strand, 8075074 - 8075174
Alignment:
Q  373 ttttttattattttgaaaaagctaaactagcccgcctaaattagtagtaaagagaatcgaacacaaaaccttgaggaggagcacactcttaagtccaaag 472  Q
    |||||| || ||||||| |||||||| |||||| || |||||   | || || |||||||||   |||||||||||||||||||||||  |||||| |||    
T  8075074 ttttttttttttttgaagaagctaaattagcccacccaaattgacactagagggaatcgaacctgaaaccttgaggaggagcacactcccaagtcccaag 8075173  T
Q  473 c 473  Q
    |    
T  8075174 c 8075174  T

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