View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5558_high_16 (Length: 275)
Name: NF5558_high_16
Description: NF5558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5558_high_16 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 16 - 268
Target Start/End: Complemental strand, 39844888 - 39844636
Alignment:
| Q |
16 |
gtggtgaccttcgagcaaatggaccaagatgagatagacgaagacgatatctgctgactatttccgaggcggtaagatcagcaaaagacgaagacgaagg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
39844888 |
gtggtgaccttcgagcaaatggaccaagacgagatagacgaagacggtatctgctgactatttccgagtcggtaagatcagcaaaagacgaagacgaagg |
39844789 |
T |
|
| Q |
116 |
atgatgttgcattttttgaagtgcgaccgagggtttgttcaattccattaccttgacatcnnnnnnnatcacgagagttcccacatctggcatcctgagc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
39844788 |
atgatgttgcattttttgaagtgcgaccgagggtttgttcaattccattaccttgacatctttttttatcacgagagttcccacatctggcatcctgagc |
39844689 |
T |
|
| Q |
216 |
tgttgagcagatttaacaaggctataaatttcttcataaacacctcccctatg |
268 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39844688 |
tgttgagtagatttaacaaggctataaatttcttcataaacacctcccttatg |
39844636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 49 - 164
Target Start/End: Complemental strand, 39839948 - 39839833
Alignment:
| Q |
49 |
atagacgaagacgatatctgctgactatttccgaggcggtaagatcagcaaaagacgaagacgaaggatgatgttgcattttttgaagtgcgaccgaggg |
148 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||| | |
|
|
| T |
39839948 |
atagacgaagacgaaatctgctgactatttccgaggcggtaagatcagcagaagacgaagacgaaggatgatgttgcattttttgaagtgcgtctgagag |
39839849 |
T |
|
| Q |
149 |
tttgttcaattccatt |
164 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
39839848 |
tttgttcaattccatt |
39839833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 235
Target Start/End: Complemental strand, 39849434 - 39849382
Alignment:
| Q |
183 |
atcacgagagttcccacatctggcatcctgagctgttgagcagatttaacaag |
235 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
39849434 |
atcacgagagatcccacatctggcatcctgagttgttgagcagatttaacaag |
39849382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 194 - 243
Target Start/End: Complemental strand, 35165269 - 35165220
Alignment:
| Q |
194 |
tcccacatctggcatcctgagctgttgagcagatttaacaaggctataaa |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
35165269 |
tcccacatctggcatcctgagctgttgagcagatttaataaggccataaa |
35165220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 100 - 164
Target Start/End: Original strand, 44798518 - 44798582
Alignment:
| Q |
100 |
aagacgaagacgaaggatgatgttgcattttttgaagtgcgaccgagggtttgttcaattccatt |
164 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| | | ||| ||||||||||||||||| |
|
|
| T |
44798518 |
aagacgaagacgaaggatgatgttccattttttgaagtaagtctgagagtttgttcaattccatt |
44798582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 243
Target Start/End: Original strand, 44795482 - 44795527
Alignment:
| Q |
198 |
acatctggcatcctgagctgttgagcagatttaacaaggctataaa |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
44795482 |
acatctggcatcctgagctgttgagcagatttaataaggccataaa |
44795527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 137
Target Start/End: Complemental strand, 35161585 - 35161548
Alignment:
| Q |
100 |
aagacgaagacgaaggatgatgttgcattttttgaagt |
137 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
35161585 |
aagacgaagacgaaggatgatgttccattttttgaagt |
35161548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 114
Target Start/End: Complemental strand, 35161647 - 35161583
Alignment:
| Q |
53 |
acgaagacgatatctgctgactatttccga---ggcggtaagatcagcaaaagacgaagacgaag |
114 |
Q |
| |
|
|||||||||| ||||||||||||||||||| || |||| || ||||| ||||||||||||||| |
|
|
| T |
35161647 |
acgaagacgaaatctgctgactatttccgagggggtggtaggagcagcagaagacgaagacgaag |
35161583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University